| Sequence ID | dm3.chr2R |
|---|---|
| Location | 12,226,017 – 12,226,123 |
| Length | 106 |
| Max. P | 0.547888 |
| Location | 12,226,017 – 12,226,123 |
|---|---|
| Length | 106 |
| Sequences | 5 |
| Columns | 107 |
| Reading direction | forward |
| Mean pairwise identity | 71.82 |
| Shannon entropy | 0.48657 |
| G+C content | 0.55031 |
| Mean single sequence MFE | -35.12 |
| Consensus MFE | -17.02 |
| Energy contribution | -17.50 |
| Covariance contribution | 0.48 |
| Combinations/Pair | 1.25 |
| Mean z-score | -1.47 |
| Structure conservation index | 0.48 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.11 |
| SVM RNA-class probability | 0.547888 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 12226017 106 + 21146708 UUGAGGGAGAGUGGUGGUUGGUGCUUAGUGCUUGGUGGGCAUGACCCACUUAUGGGUGAAGACGCUCCCAGCCUGUCCCACAAUGCUCCACCGAGCAAAAUUCCAU- (((.((((.((.(.(((..(((((((..(.(..((((((.....))))))...).)..))).)))).))).))).)))).)))(((((....))))).........- ( -38.40, z-score = -0.87, R) >droAna3.scaffold_13266 15602213 105 + 19884421 AUGAGGGGAUCUGGGAGACAGUGGUCUGG--UCUGUGGGCUUGACCCACUUAUCAGUGAAGACGCUCCCAACCUGUCUCGCAGUGAUGCAGGGAAAGAAAUAACAAU ....(((....((((((........((((--(..(((((.....)))))..)))))........)))))).))).(((((((....))).))))............. ( -35.19, z-score = -0.99, R) >droEre2.scaffold_4845 8952963 89 - 22589142 --------------UUGAGGGAACUCUCC-CUCGAUGGGCAUGACCCACUUAUGGGCGAAGACGCUCC--GCCUGUCCCACAAUGCUCCACCGAGCGAAAUUCGAU- --------------..((((((....)))-)))(((((((((((.....))))(((((....))).))--)))))))......(((((....))))).........- ( -30.40, z-score = -2.24, R) >droYak2.chr2R 4379087 91 - 21139217 --------------UUGAGGGAACUCUCC-CUCGGUGGGCAUGACCCACUUAUCGGCGAAGACGCUCCCAGUCUGUCCCACAAUGCUCCACCGAGCGAAAUUCAAU- --------------..(((....)))((.-((((((((((((((........))((.((((((.......)))).))))...)))).)))))))).))........- ( -32.00, z-score = -2.55, R) >droSim1.chr2R 10956749 106 + 19596830 UUGAGGGAGAGUGGUGGUUGGUGCUUGGUGCUUGGUGGGCAUGACCCACUUAUGGGUGAAGACGCUCCCAGGCUGUCCCACAAUGCUCCACCGAGCAAAAUUCCAU- ....(((((((((.(....).)))))..((((((((((((((.(((((....)))))...((((((....))).))).....)))).))))))))))...))))..- ( -39.60, z-score = -0.69, R) >consensus _UGAGGG____UGGUGGAGGGUGCUCUGC_CUCGGUGGGCAUGACCCACUUAUGGGUGAAGACGCUCCCAGCCUGUCCCACAAUGCUCCACCGAGCGAAAUUCCAU_ ..............................(((((((((((((((........(((((....))))).......))).....)))).))))))))............ (-17.02 = -17.50 + 0.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:27:05 2011