| Sequence ID | dm3.chr2R |
|---|---|
| Location | 12,221,851 – 12,221,924 |
| Length | 73 |
| Max. P | 0.651635 |
| Location | 12,221,851 – 12,221,924 |
|---|---|
| Length | 73 |
| Sequences | 8 |
| Columns | 76 |
| Reading direction | reverse |
| Mean pairwise identity | 68.24 |
| Shannon entropy | 0.60850 |
| G+C content | 0.62296 |
| Mean single sequence MFE | -30.75 |
| Consensus MFE | -6.91 |
| Energy contribution | -6.02 |
| Covariance contribution | -0.89 |
| Combinations/Pair | 1.73 |
| Mean z-score | -2.50 |
| Structure conservation index | 0.22 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.34 |
| SVM RNA-class probability | 0.651635 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 12221851 73 - 21146708 AUGGGGCAGGAGGAGGAAGGCGGAUCUGG--AGAC-GGAGCCGGGGAGCUGGGCUGUUGUCACUCCUUGGGCUCAU ...((((..((((((((..((((.((((.--...)-))).((((....)))).))))..)).))))))..)))).. ( -35.50, z-score = -3.87, R) >droSim1.chr2R 10952619 73 - 19596830 AUGGGGCAGGAGGAGGAAGGCGGAUCUGG--AGAC-GGAGCCGGGGAGCUGGGCUGUUGUCACUCCUUGGGCUCGU ...((((..((((((((..((((.((((.--...)-))).((((....)))).))))..)).))))))..)))).. ( -35.50, z-score = -3.64, R) >droSec1.super_1 9719599 73 - 14215200 AUGGGGCAGGAGGAGGAAGGCGGAUCUGG--AGAC-GGAGCCGGGGAGCUGGGCUGUUGUCACUCCUUGGGCUCGU ...((((..((((((((..((((.((((.--...)-))).((((....)))).))))..)).))))))..)))).. ( -35.50, z-score = -3.64, R) >droYak2.chr2R 4374867 71 + 21139217 CUGGGGCAGGAGGAGGAAGGCGGAUCUAG--AGCC---GGAGACGGAGCUGGGCUGUUGUCACUCCUUGGGCUCGU ...((((..((((((((..((((.(((((--..((---(....)))..)))))))))..)).))))))..)))).. ( -39.10, z-score = -4.72, R) >droEre2.scaffold_4845 8948862 71 + 22589142 AUGGGGCAGGAGGAGGAAGGCGGAUCUGG--AGCC---GGAGACGGAGCUAAGCUGUUGUCACUCCUUGGGCUCGU ...((((..((((((((..((((...(((--..((---(....)))..)))..))))..)).))))))..)))).. ( -34.90, z-score = -3.91, R) >droAna3.scaffold_13266 15598564 70 - 19884421 ----AUUCGAAAGGGAGGGAGAGAUAUGG--AGCCUCGAGAGAUGGAGCUGGCUUGUUGUCACUCCUUGGGCUCGU ----.(((....))).............(--((((((....)).((((.((((.....))))))))...))))).. ( -22.80, z-score = -0.58, R) >dp4.chr3 15857541 70 + 19779522 ------ACGGGGCGGAGCUGUGGCUGUGGCUGGAAAUGGAGGGGGAGGCGACGCUGUUGUCAUUCCAUGUUCUCGU ------.(.((.((.(((....))).)).)).).....((((((((((((((...)))))).))))....)))).. ( -21.50, z-score = 0.19, R) >droPer1.super_2 4928567 70 + 9036312 ------ACGGGGCGGAGCUGUGGCUGUGGCUGGAAAUGGAGGAGGAGGCGACGCUGUUGUCAUUCCAUGUUCUCGU ------.(.((.((.(((....))).)).)).).....((((((((((((((...))))))..)))...))))).. ( -21.20, z-score = 0.21, R) >consensus AUGGGGCAGGAGGAGGAAGGCGGAUCUGG__AGAC_GGAGAGAGGGAGCUGGGCUGUUGUCACUCCUUGGGCUCGU ........((((((.((.(((...............................))).)).)).)))).......... ( -6.91 = -6.02 + -0.89)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:27:02 2011