| Sequence ID | dm3.chr2R |
|---|---|
| Location | 12,215,079 – 12,215,129 |
| Length | 50 |
| Max. P | 0.606992 |
| Location | 12,215,079 – 12,215,129 |
|---|---|
| Length | 50 |
| Sequences | 4 |
| Columns | 50 |
| Reading direction | reverse |
| Mean pairwise identity | 89.67 |
| Shannon entropy | 0.16603 |
| G+C content | 0.46500 |
| Mean single sequence MFE | -5.40 |
| Consensus MFE | -3.97 |
| Energy contribution | -4.47 |
| Covariance contribution | 0.50 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.03 |
| Structure conservation index | 0.74 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.24 |
| SVM RNA-class probability | 0.606992 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 12215079 50 - 21146708 UCCAAUUGCGACUAAUAUGCGUAGUCCAAAAUUCCUCGUUAUCCCCGUAG .....(((.(((((.......))))))))..................... ( -5.50, z-score = -1.85, R) >droSim1.chr2R 10946639 50 - 19596830 UCCAAUUGCGACUAAUAUGCGUAGUCCAAAAUUCCCCACAAUCCUCGUAG .....(((.(((((.......))))))))..................... ( -5.50, z-score = -2.36, R) >droYak2.chr2R 4368226 50 + 21139217 UCCAAAUGCGACUAAUAUGCGUAGUCCCGAAUCCCCCGUAAUUCCCGUAG ......((((((((.......)))))..((((........))))..))). ( -5.10, z-score = -1.33, R) >droEre2.scaffold_4845 8942093 50 + 22589142 UCCAAUUGCGACUAAUAUGCGUAGUCCAAAAUCCCCCGUAAUCCCCGUAG .....(((.(((((.......))))))))..................... ( -5.50, z-score = -2.57, R) >consensus UCCAAUUGCGACUAAUAUGCGUAGUCCAAAAUCCCCCGUAAUCCCCGUAG .....(((.(((((.......))))))))..................... ( -3.97 = -4.47 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:26:58 2011