| Sequence ID | dm3.chr2L |
|---|---|
| Location | 3,029,175 – 3,029,253 |
| Length | 78 |
| Max. P | 0.735034 |
| Location | 3,029,175 – 3,029,253 |
|---|---|
| Length | 78 |
| Sequences | 5 |
| Columns | 80 |
| Reading direction | forward |
| Mean pairwise identity | 81.50 |
| Shannon entropy | 0.32692 |
| G+C content | 0.45481 |
| Mean single sequence MFE | -19.61 |
| Consensus MFE | -13.10 |
| Energy contribution | -13.62 |
| Covariance contribution | 0.52 |
| Combinations/Pair | 1.31 |
| Mean z-score | -1.75 |
| Structure conservation index | 0.67 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.54 |
| SVM RNA-class probability | 0.735034 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 3029175 78 + 23011544 CCACCGAGACAUAUCGAUAUAUU-CGAUAUGAAAAUGCGAGACCCUAAAUCAAGCUGGCAACGCAAAG-GACAGGGCGAU .........((((((((.....)-))))))).........(.((((.......((.(....)))....-...)))))... ( -17.84, z-score = -1.83, R) >droEre2.scaffold_4929 3076809 80 + 26641161 CCACUGAGGUAUAUCGAUACAUUUCGAUAAGAAAAGAAACGAAGCAAAGACAAGCUGGCACCCCUAUAAGACAGGGUGAU ((.........((((((......)))))).............(((........)))))(((((..........))))).. ( -15.30, z-score = -1.60, R) >droYak2.chr2L 3024523 80 + 22324452 CCACUCAGGCAUAUCGAUUAAUUUCGAUAAGAAAAUGCACGACGUAAAGACAAGCUGGCACCCCUAUAUGACAGGGUGAU .......(((.((((((......))))))......(((.....))).......)))..(((((..........))))).. ( -15.90, z-score = -0.84, R) >droSec1.super_5 1186277 80 + 5866729 CCACCGAGGCAUAUCGAUAUAUUUCGAUGUGAAAAUGCGUGACGCCAAAUCGAGCUGGCAACCCAAUUUGACAGGGUGAU .(((((...((((((((......))))))))....)).))).((((...(((((.(((....))).)))))...)))).. ( -24.50, z-score = -2.24, R) >droSim1.chr2L 2970189 80 + 22036055 CCACCGAGGCAUAUCGAUAUAUUUCGAUGUGAAAAUGCGUGACGCCAAAUCGAGCUGGCAACCCAAUUUGACAGGGUGAU .(((((...((((((((......))))))))....)).))).((((...(((((.(((....))).)))))...)))).. ( -24.50, z-score = -2.24, R) >consensus CCACCGAGGCAUAUCGAUAUAUUUCGAUAUGAAAAUGCGCGACGCAAAAUCAAGCUGGCAACCCAAUAUGACAGGGUGAU .((((....((((((((......))))))))............((((........))))...............)))).. (-13.10 = -13.62 + 0.52)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:12:49 2011