| Sequence ID | dm3.chr2R |
|---|---|
| Location | 12,197,515 – 12,197,625 |
| Length | 110 |
| Max. P | 0.689902 |
| Location | 12,197,515 – 12,197,625 |
|---|---|
| Length | 110 |
| Sequences | 13 |
| Columns | 116 |
| Reading direction | reverse |
| Mean pairwise identity | 77.84 |
| Shannon entropy | 0.49965 |
| G+C content | 0.48135 |
| Mean single sequence MFE | -28.72 |
| Consensus MFE | -15.94 |
| Energy contribution | -15.94 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.35 |
| Mean z-score | -1.22 |
| Structure conservation index | 0.56 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.42 |
| SVM RNA-class probability | 0.689902 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 12197515 110 - 21146708 UUCUCCCGGCGCGCCUCCAGCUCCAUGGAGCUGCAGUUCUUAUCUAAAUUGAGGUUGUAUCGUUCCAUGUACAAAUUUGAUUGCCGCUGAUUCGGAUUCGCAUUUCCAUU------ ......(((((.((((.((((((....)))))).))..........(((..((.((((((........)))))).))..))))))))))....(((........)))...------ ( -30.90, z-score = -1.74, R) >droPer1.super_2 4899663 116 + 9036312 UUCUCCCGACGUGCCUCCAACUCCAUGGAGCUGCAGUUUUUAUCUAAAUUGAGGUUGUAUCGUUCCAUGUACAAAUUUGAUUGCAACCGAGUCGUAUUCUGAUGUCGAUUCUGAAU .......(((.((((((((......)))))..))))))..............((((((((((...............))).)))))))(((((((((....))).))))))..... ( -24.76, z-score = -0.56, R) >dp4.chr3 15826079 116 + 19779522 UUCUCCCGACGUGCCUCCAACUCCAUGGAGCUGCAGUUUUUAUCUAAAUUGAGGUUGUAUCGUUCCAUGUACAAAUUUGAUUGCAACUGAGUCGUAUUCUGAUGUUGAUUCUGAAU ......((((.(((...(((...(((((((((((((..((..........))..)))))..)))))))).......)))...))).....)))).((((.((.......)).)))) ( -21.70, z-score = 0.34, R) >droAna3.scaffold_13266 15575108 110 - 19884421 UUCUCCCGACGCGCCUCCAGCUCCAUGGAGCUGCAGUUCUUAUCUAAAUUGAGGUUGUAUCGUUCCAUGUACGAAUUUGAUUGCCGCUGAUUUGGAUUCCCAUUUGUAUU------ ......(((..((((((((((((....)))))).((.......)).....)))).))..)))......((((((((..((...(((......)))..))..)))))))).------ ( -27.40, z-score = -1.36, R) >droEre2.scaffold_4845 8924487 110 + 22589142 UUCUCCCGUCGCGCCUCCAGCUCCAUGGAGCUGCAGUUCUUAUCUAAAUUGAGGUUGUAUCGUUCCAUGUACAAAUUUGAUUGCCGCUGAUUCGGAUUCCCAUUUCCAUU------ ...(((.((((((.((.((((((....)))))).))..........(((..((.((((((........)))))).))..)))..))).)))..)))..............------ ( -25.40, z-score = -1.26, R) >droYak2.chr2R 4350574 110 + 21139217 UUCUCCCGGCGCGCCUCCAGCUCCAUGGAGCUGCAGUUCUUAUCUAAAUUGAGGUUGUAUCGUUCCAUGUACAAAUUUGAUUGCCGCUGAUUCGGAUUCCCAUUUCCAUU------ ......(((((.((((.((((((....)))))).))..........(((..((.((((((........)))))).))..))))))))))....(((........)))...------ ( -30.90, z-score = -2.28, R) >droSec1.super_1 9696842 110 - 14215200 UUCUCCCGGCGCGCCUCCAGCUCCAUGGAGCUGCAGUUCUUAUCUAAAUUGAGGUUGUAUCGUUCCAUGUACAAAUUUGAUUGCCGCUGAUUCGGAUUCGCAUUUCCAUU------ ......(((((.((((.((((((....)))))).))..........(((..((.((((((........)))))).))..))))))))))....(((........)))...------ ( -30.90, z-score = -1.74, R) >droSim1.chr2R 10928921 110 - 19596830 UUCUCCCGGCGCGCCUCCAGCUCCAUGGAGCUGCAGUUCUUAUCUAAAUUGAGGUUGUAUCGUUCCAUGUACAAAUUUGAUUGCCGCUGAUUCGGAUUCGCAUUUCCAUU------ ......(((((.((((.((((((....)))))).))..........(((..((.((((((........)))))).))..))))))))))....(((........)))...------ ( -30.90, z-score = -1.74, R) >droVir3.scaffold_12823 2339365 102 - 2474545 UUUUCGCGUCGCGCCUCCAGCUCCAUGGAGCUGCAGUUCUUAUCUAAAUUAAGCUUGUAUCGCUCCAUGUACAAAUGCGAUUGCGGC----UCAUACGGCACUUCC---------- ....((((((((((.....))..(((((((((((((..((((.......)))).)))))..)))))))).......)))).))))((----(.....)))......---------- ( -30.30, z-score = -2.15, R) >droMoj3.scaffold_6496 1702135 105 - 26866924 UUCUCGCGUCGCGCCUCCAGCUCCAUGGAGCUGCAGUUUUUAUCUAAAUGAAGCUUGUAUCGCUCCAUGUACAAAUUCGAUUGCGGCUG-AUCAUACGGCACUUCC---------- ....(((((((.((.....))..(((((((((((((.((((((....)))))).)))))..))))))))........))).))))((((-......))))......---------- ( -29.60, z-score = -1.57, R) >droGri2.scaffold_15245 2598204 105 + 18325388 UUCUCCCGUCGCGCCUCCAGCUCCAUGGAGCUGCAGUUUUUAUCUAAAUUAAGCUUGUAUCGCUCCAUGUACAAAUUCGAUUGCGGCGG-CUCAUAUGGCACUUCC---------- .....(((((((((.....))..((((((((((((((((...........)))).))))..)))))))).............)))))))-................---------- ( -29.80, z-score = -2.18, R) >droWil1.scaffold_180697 1772346 115 - 4168966 UUCUCCCGUCGCGCCUCUAGCUCCAUCGAGCUGCAAUUUUUAUCUAAAUUAAGGUUGUAACGCUCCAUGUAGAAAUUCGAUUGCAGCAGCUGAUGAUCACCAUUUCCAUGAUGAU- ......((((((((.....))........(((((((((....((((......(((......))).....)))).....))))))))).)).))))((((.(((....))).))))- ( -24.00, z-score = -0.33, R) >anoGam1.chr3R 5011107 92 - 53272125 UUGUCCCGACGCACCUCCAGCUCCAUCGCGCUG------------ACGGAGGGUUUGCGCGGCUCGGUG---GAGGCCGGCGGUGGCGCAGACUCAUCGCUUCCUCC--------- (((..(((.((((((((((((........))).------------..)))))...)))))))..))).(---((((..((((((((.......)))))))).)))))--------- ( -36.80, z-score = 0.71, R) >consensus UUCUCCCGUCGCGCCUCCAGCUCCAUGGAGCUGCAGUUCUUAUCUAAAUUGAGGUUGUAUCGUUCCAUGUACAAAUUUGAUUGCCGCUGAUUCGGAUUCCCAUUUCCAUU______ ..........((((((.((((((....)))))).))..........(((..((.((((((........)))))).))..))))).))............................. (-15.94 = -15.94 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:26:57 2011