| Sequence ID | dm3.chr2R |
|---|---|
| Location | 12,187,446 – 12,187,545 |
| Length | 99 |
| Max. P | 0.949647 |
| Location | 12,187,446 – 12,187,545 |
|---|---|
| Length | 99 |
| Sequences | 12 |
| Columns | 109 |
| Reading direction | reverse |
| Mean pairwise identity | 74.12 |
| Shannon entropy | 0.52985 |
| G+C content | 0.42773 |
| Mean single sequence MFE | -24.10 |
| Consensus MFE | -8.90 |
| Energy contribution | -9.07 |
| Covariance contribution | 0.17 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.54 |
| Structure conservation index | 0.37 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.55 |
| SVM RNA-class probability | 0.949647 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 12187446 99 - 21146708 AAUCGCAUCUAGAAAAACAAGUAGCCGAC--------AGAGAGUCGGGC-AAAAGGUAAAUCGAAGCC-GAGAUUAAUAGCGAUAAGGCUAUUGAUUAGCAUUUUAGCC ........((((((..........(((((--------.....)))))((-....(((........)))-..((((((((((......)))))))))).)).)))))).. ( -25.60, z-score = -2.80, R) >droSim1.chr2R 10919882 99 - 19596830 AAUCGCAUCUCGAAAAACAAGUAGCCGAC--------AGAGAGUCGGGC-AAAAGGUAAAUCGAAGCC-GAGAUUAAUAGCGAUAAGGCUAUUGAUUAGCAUUUUAGCC .((((((((((.............(((((--------.....)))))..-....(((........)))-))))).....)))))..(((((.((.....))...))))) ( -26.40, z-score = -2.62, R) >droSec1.super_1 9686710 99 - 14215200 AAUCGCAUCUCGAAAAACAAGUAGCCGAC--------AGAGAGUCGGGC-AAAAGGUAAAUCGAAGCC-GAGAUUAAUAGCGAUAAGGCUAUUGAUUAGCAUUUUAGCC .((((((((((.............(((((--------.....)))))..-....(((........)))-))))).....)))))..(((((.((.....))...))))) ( -26.40, z-score = -2.62, R) >droYak2.chr2R 4340271 107 + 21139217 AAUCGCAUCUCGAAAAACAAGUAGCCGACAGAGAGUCAGAGAGUCGGGC-AAAAGGUAAAUCGAAGCC-GAGAUUAAUAGCGAUAAGGCUAUUGAUUAGCAUUUUAGCC .((((((((((............((((((.....))).(.....).)))-....(((........)))-))))).....)))))..(((((.((.....))...))))) ( -25.30, z-score = -1.75, R) >droEre2.scaffold_4845 8914457 97 + 22589142 AAUCGCAUCUCGAAAAACAAGUAGCCGAC----------AGAGUCGGGC-AAAAGGUAAAUCGAAGCC-GAGAUUAAUAGCGAUAAGGCUAUUGAUUAGCAUUUUAGCC .((((((((((.............(((((----------...)))))..-....(((........)))-))))).....)))))..(((((.((.....))...))))) ( -24.80, z-score = -2.20, R) >droAna3.scaffold_13266 15566057 96 - 19884421 -------AUCCGGAAAACAAGUAGCCGACAG-----CGGAGAACCGGGUAAAAAGGUAAAUCGAAGCC-GAGAUUAAUAGCGAUAAGACUAUUGAUUAGCAUUUUAGCC -------((((((........(..(((....-----)))..).)))))).....(((...(((....)-))((((((((((.....).))))))))).........))) ( -18.80, z-score = -0.81, R) >dp4.chr3 15817434 79 + 19779522 ------------------------CGGAAAA-----CAAGUAGCCGGGCAAAAAGGUAAAUCGAAGCC-GAGAUUAAUAGCGAUAAGGCUAUUGAUUAGCAUUUUAGCC ------------------------(((....-----.......)))(((.((((.((.((((((((((-...(((......)))..)))).)))))).)).)))).))) ( -19.20, z-score = -2.15, R) >droPer1.super_2 4890936 79 + 9036312 ------------------------CGGAAAA-----CAAGUAGCCGGGCAAAAAGGUAAAUCGAAGCC-GAGAUUAAUAGCGAUAAGGCUAUUGAUUAGCAUUUUAGCC ------------------------(((....-----.......)))(((.((((.((.((((((((((-...(((......)))..)))).)))))).)).)))).))) ( -19.20, z-score = -2.15, R) >droWil1.scaffold_180697 1756347 92 - 4168966 ---------CAGCAAAACGAGUAGCUUUA-------GCCGCCACUUGGCAAAAAGGUAAAUCGAAGCC-GAGAUUAAUAGCGAUAAGGCUAUUGAUUAGCAUUUUAGCC ---------..((....(((((.((....-------...)).)))))((.....(((........)))-..((((((((((......)))))))))).))......)). ( -23.50, z-score = -1.75, R) >droVir3.scaffold_12823 2325227 94 - 2474545 -AGUCAGAGCUACAAAACGAGUAGCAAA-----------GUCGCCUGCC--AAAGGUAAAUCGAAGCCUGAGAUUAAUAGCGAUAAG-CUAUUGAUUAGCCAGCCAGCC -..((((.(((((.......)))))...-----------...((((...--..))))..........))))((((((((((.....)-)))))))))............ ( -25.20, z-score = -2.82, R) >droMoj3.scaffold_6496 1684800 94 - 26866924 -AACAGCAGCUACAAAACGAGUAGCAAA-----------GUUGCCUGCC--AAAGGUAAAUCGAAGCCAGAGAUUAAUAGCGAUAAG-CUAUUGAUUAGCCAGGCAGCC -.......(((((.......)))))...-----------((((((((.(--...(((........)))...((((((((((.....)-))))))))).).)))))))). ( -33.70, z-score = -5.93, R) >droGri2.scaffold_15245 2573392 82 + 18325388 ------------CAAAACGAGUAGCAAA-----------GUUG-CUGCC--AAAGGUAAAUCGAAGCCCGAGAUUAAUAGCGAUAAG-CUAUUGAUUAGCAAUGCAGCC ------------......(.((((((..-----------..))-)))))--...(((...(((.....)))((((((((((.....)-))))))))).........))) ( -21.10, z-score = -2.83, R) >consensus _A_C___UCUCGAAAAACAAGUAGCCGAC________AGAGAGCCGGGC_AAAAGGUAAAUCGAAGCC_GAGAUUAAUAGCGAUAAGGCUAUUGAUUAGCAUUUUAGCC .......................((.............................(((........)))...(((((((((........))))))))).))......... ( -8.90 = -9.07 + 0.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:26:52 2011