| Sequence ID | dm3.chr2R |
|---|---|
| Location | 12,186,489 – 12,186,582 |
| Length | 93 |
| Max. P | 0.638231 |
| Location | 12,186,489 – 12,186,582 |
|---|---|
| Length | 93 |
| Sequences | 4 |
| Columns | 102 |
| Reading direction | reverse |
| Mean pairwise identity | 85.81 |
| Shannon entropy | 0.22150 |
| G+C content | 0.56276 |
| Mean single sequence MFE | -24.28 |
| Consensus MFE | -22.23 |
| Energy contribution | -22.35 |
| Covariance contribution | 0.12 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.01 |
| Structure conservation index | 0.92 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.31 |
| SVM RNA-class probability | 0.638231 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 12186489 93 - 21146708 GCGGUGGUCCACGGCCAUCAGAAUCCCAGACAGCCAGCCGCAUAUGCAAGUGGCUCCCGUCGCCGCACGAUCAUA--UCCAAUCCAUAUCCAUAU------- (((((((.....(((..((.........))..)))((((((........))))))....))))))).........--..................------- ( -24.90, z-score = -1.21, R) >droSim1.chr2R 10918927 93 - 19596830 GCGGUGGUCCACGGCCAUCAGAAUCCCAGACAGCCAGCCGCAUAUGCAAGUGGCUCCCGUCGCCGCACGAUCAUA--UCCAAUCCACAUCCAUAU------- (((((((.....(((..((.........))..)))((((((........))))))....))))))).........--..................------- ( -24.90, z-score = -1.24, R) >droSec1.super_1 9685745 93 - 14215200 GCGGUGGUCCACGGCCAUCAGAAUCCCAGACAGCCAGCCGCAUAUGCAAGUGGCUCCCGUCGCCGCACGAUCAUA--UCCAAUCCAUAUCCAUAU------- (((((((.....(((..((.........))..)))((((((........))))))....))))))).........--..................------- ( -24.90, z-score = -1.21, R) >droAna3.scaffold_13266 15565005 98 - 19884421 GUGGUGGUCCACGGCCAUCAGAAUCCCAGA----CAGCCGCAUAUGCAAGUGGCUCCCGUCUCCACAGCUCUACAACUCCAUUCCAAAAAUAUAUGUUCGGC ((((((((.....))))..........(((----(((((((........))))))...)))))))).(((..(((...................)))..))) ( -22.41, z-score = -0.39, R) >consensus GCGGUGGUCCACGGCCAUCAGAAUCCCAGACAGCCAGCCGCAUAUGCAAGUGGCUCCCGUCGCCGCACGAUCAUA__UCCAAUCCAUAUCCAUAU_______ ((((((((.....)))............(((....((((((........))))))...)))))))).................................... (-22.23 = -22.35 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:26:50 2011