| Sequence ID | dm3.chr2R |
|---|---|
| Location | 12,172,174 – 12,172,285 |
| Length | 111 |
| Max. P | 0.670751 |
| Location | 12,172,174 – 12,172,285 |
|---|---|
| Length | 111 |
| Sequences | 6 |
| Columns | 117 |
| Reading direction | reverse |
| Mean pairwise identity | 77.16 |
| Shannon entropy | 0.42002 |
| G+C content | 0.40943 |
| Mean single sequence MFE | -26.65 |
| Consensus MFE | -14.63 |
| Energy contribution | -16.80 |
| Covariance contribution | 2.17 |
| Combinations/Pair | 1.15 |
| Mean z-score | -1.65 |
| Structure conservation index | 0.55 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.39 |
| SVM RNA-class probability | 0.670751 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 12172174 111 - 21146708 AUAUCCUAAUGCCGAAACGCGGUUUGCCCGAGAGGAUCUCCUCCACUUUGGUUUGCUUUGUGCAGAAUCUGUAAGGAGCAAUAAUGUUGUAUAUAUUAUCCACUUGUGUGA------ ..........((((((.((.((....)))).((((....))))...))))))((((((..(((((...)))))..))))))((((((.....))))))..(((....))).------ ( -28.70, z-score = -1.49, R) >droAna3.scaffold_12943 912631 107 + 5039921 ACAUUUUUAUGCCAAAGCGCGGCUUGCCGGUUAAAAUCUCAUCCACCUUCACUUGCUCUGUGCAGAAUCUUUUCA-AACAAUUA---CUUAAAGUCUAUGGAUUUAAACAA------ ..........((....)).(((....)))(((.(((((.(((..((.......(((.....)))(((....))).-........---......))..)))))))).)))..------ ( -14.80, z-score = 0.37, R) >droEre2.scaffold_4929 15979161 106 - 26641161 AAAUCCUAAUGCCGAAACGGGGUUUGCCCGAGAGAAUCUCCUCUACUUUGGUUUGCUCUGUGCAGAAUCUGUAAGGAGCAAAAA----ACAUAUUAUAUCUUCUUUGGUA------- .........(((((((.((((.....))))((((......))))....((.((((((((.(((((...))))).))))))))..----.))............)))))))------- ( -30.70, z-score = -2.67, R) >droYak2.chr2L 16479456 112 + 22324452 AAAUCCUAAUGCCGAAUCGCGGUUUGCCCGAUAGGAUUUCCUCUACUUUGCUUUGCUCCGUGCAGAAUCUGUAAAGAGCACUGA----A-AUAUUAAAUCUUCUUUGGUGCUUUUUA ((((((((........(((.((....)))))))))))))............(((((.....))))).....((((((((((..(----(-.............))..)))))))))) ( -26.92, z-score = -1.94, R) >droSec1.super_1 9671693 108 - 14215200 AUAUCCUAAUGCCGAAACGUGGUUUGCCCGAGAGGAUCUCCUCCACUUUGGUUUGCUCUGUGCAGAAUCUGUAAGGAGCAAUAA---UGUAUAUAUUAUCCACUUGUGUGA------ ..........((((((.((.((....)))).((((....))))...))))))(((((((.(((((...))))).)))))))...---.............(((....))).------ ( -29.40, z-score = -2.02, R) >droSim1.chr2R 10906490 108 - 19596830 AAAUCCUAAUGCCGAAACGUGGUUUGCCCGAGAGGAUCUCCUCCACUUUGGUUUGCUCUGUGCAGAAUCUGUAAGGAGCAAUAA---UGUAUAUAUUAUCCACUUGUGUGA------ ..........((((((.((.((....)))).((((....))))...))))))(((((((.(((((...))))).)))))))...---.............(((....))).------ ( -29.40, z-score = -2.18, R) >consensus AAAUCCUAAUGCCGAAACGCGGUUUGCCCGAGAGGAUCUCCUCCACUUUGGUUUGCUCUGUGCAGAAUCUGUAAGGAGCAAUAA___UGUAUAUAUUAUCCACUUGUGUGA______ ..........((((((.((.((....)))).((((....))))...))))))(((((((.(((((...))))).))))))).................................... (-14.63 = -16.80 + 2.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:26:48 2011