| Sequence ID | dm3.chr2L |
|---|---|
| Location | 3,026,909 – 3,027,016 |
| Length | 107 |
| Max. P | 0.914374 |
| Location | 3,026,909 – 3,027,016 |
|---|---|
| Length | 107 |
| Sequences | 12 |
| Columns | 117 |
| Reading direction | forward |
| Mean pairwise identity | 64.97 |
| Shannon entropy | 0.78054 |
| G+C content | 0.46227 |
| Mean single sequence MFE | -28.67 |
| Consensus MFE | -15.49 |
| Energy contribution | -15.87 |
| Covariance contribution | 0.38 |
| Combinations/Pair | 1.40 |
| Mean z-score | -0.51 |
| Structure conservation index | 0.54 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.24 |
| SVM RNA-class probability | 0.914374 |
| Prediction | RNA |
| WARNING | Out of training range. z-scores are NOT reliable. |
Download alignment: ClustalW | MAF
>dm3.chr2L 3026909 107 + 23011544 UGGAAGCCCCUAUGCGGUCGGUGCGCUUCUCAGGCAGCACUUGAUACAGAACAGGAGUUUCGUUGCUAGG-AG-AAGUUGGAAUA--AUGGGCUUAAUCGUGA-UGUUAUUU----- ...((((((....(((.....)))(((((((.((((((.((((........))))......))))))..)-))-)))).......--..))))))........-........----- ( -27.20, z-score = 0.66, R) >droSec1.super_5 1184015 106 + 5866729 UGGAAGCCCCUAUGCGAUCGGUGCGCUUCUCGGGCAGCACUUGAUACAGAACAGGGGUUUCGUUGCUGAA-AG-AAGUUGGAAUA--AUGG-CUUAAUCGUGA-UGUUAUCU----- ..(((((((((...(.(((((((((((.....))).)))).))))...)...)))))))))((..(.((.-..-((((((.....--.)))-)))..)))..)-).......----- ( -32.70, z-score = -1.10, R) >droYak2.chr2L 3022250 107 + 22324452 UGGAAGCCCCUAUGCGGUCGGUGCGCUUCUCGGGCAGCACUUGGUACAGUACGGGGGUUUCAUUGCUAGA-AG-AAGUUUGAAUA--GUAAACUUAGUGUUGG-UCUUAUCU----- ..((((((((..(((.(((((((((((.....))).)))))..).)).)))..))))))))...(((((.-..-(((((((....--.)))))))....))))-).......----- ( -35.20, z-score = -1.52, R) >droEre2.scaffold_4929 3074529 103 + 26641161 UGGAAGCCCCUAUGCGGUCGGUGCGCUUUUCGUGCAGCACUUGGUACAGUACGGGGGUUUCAUUGCU----AA-AAAUUAGAAUA--A-GCCUAUUAUCUUGA-UCUUAUCU----- ..((((((((..(((.((((((((((.......)).)))))..).)).)))..))))))))......----..-.....(((.((--(-(........)))).-))).....----- ( -28.90, z-score = -0.96, R) >droAna3.scaffold_12916 4449565 105 + 16180835 UAGAUGCGCCGAUACGGUCCGUGCGCUUUUCCGGUAGUACUUGAUAAAGAACAGGUGUCUCAUUGCUAUA-AA-AAAUGGAAAUG--AUUUG--UUAUGGUAAUUCUUUUG------ ..((.(((((......(((.(((((((.....))).))))..)))........))))).))(((((((((-(.-((((.......--)))).--)))))))))).......------ ( -21.74, z-score = -0.03, R) >droPer1.super_1 1595851 116 - 10282868 UGGAAGCGCCUAUGCGGUCUGUGCGCUUCUCCGGCAGCACUUGAUACAGCACGGGGGUUUCAUUGCUAAUCGA-AAGGAAGAAUAUUAUGAGAUUAGUGAAGAGUCUGGUCUGGUUC ..(((((.((..(((.(((.(((((((.....))).))))..)))...)))..)).)))))........((..-..)).........((.(((((((........))))))).)).. ( -35.90, z-score = -0.88, R) >dp4.chr4_group3 4450085 116 - 11692001 UGGAAGCGCCUAUGCGGUCUGUGCGCUUCUCCGGCAGCACUUGAUACAGCACGGGGGUUUCAUUGCUAAUCGA-AAGGAAGAAUAUUAUGAGAUUAGUGAAGAGUCUGGUCUGGUUC ..(((((.((..(((.(((.(((((((.....))).))))..)))...)))..)).)))))........((..-..)).........((.(((((((........))))))).)).. ( -35.90, z-score = -0.88, R) >droWil1.scaffold_180708 2754284 102 + 12563649 UGGAAGCACCAAUGCGAUCAGUGCGCUUCUCCGGCAGCACUUGAUAAAGCACGGGGGUUUCAUUACUAAAUGC-AAAAAAUAAAGGAAAUUAUGAACCGUUUA-------------- ..(((((.((..(((.(((((((((((.....))).)))).))))...)))..)).))))).....((((((.-.....((((......))))....))))))-------------- ( -25.30, z-score = -1.08, R) >droVir3.scaffold_12963 7086002 104 + 20206255 UGGAGGCGCCUAUGCGGUCUGUGCGCUUCUCUGGCAGCACCUGAUACAGAACAGGCGUUUCAUUGCUGUUUAA-GAGGAAUCGAAUAAUUUAGCUGGUCUUAUGU------------ ..(((((((((...(.(((.(((((((.....))).))))..)))...)...)))))))))...((((.(((.-((....))...)))..))))...........------------ ( -28.40, z-score = 0.45, R) >droMoj3.scaffold_6500 28513886 103 - 32352404 UGGAGGCGCCAAUGCGAUCGGUGCGCUUUUCUGGCAGCACUUGGUAGAGUACGGGCGUUUCAUUGCUACA-AG-AAAGAGGAUUACAGGUUAGCUUGUCUUGUUU------------ ..((((((((..(((.(((((((((((.....))).)))).))))...)))..))))))))......(((-((-((((..(((.....)))..))).))))))..------------ ( -35.50, z-score = -1.82, R) >droGri2.scaffold_15252 10234532 98 + 17193109 UUGAAGCACCUAUGCGGUCUGUGCGCUUCUCCGGCAGCACCUGAUACAAUACAGGCGUUUCAUUGCUGUA-------GACGAAUAGGACUUGGUUAGUUUCAAUC------------ ((((((((((.....(((((...((..(((.(((((((.((((........)))).)).....))))).)-------))))....))))).)))..)))))))..------------ ( -27.70, z-score = -0.84, R) >triCas2.ChLG7 12261160 91 + 17478683 UGGAACCACCUAUUCUCUCAUUGCGUUUUUCGGGAAUGACAUGAUACAAAAUCGGGUUUUCACCCCUACAAAACAAUUUAAAAUACCCCCC-------------------------- .((..............((((..(((((.....)))))..)))).........((((....))))....................))....-------------------------- ( -9.60, z-score = 1.88, R) >consensus UGGAAGCGCCUAUGCGGUCGGUGCGCUUCUCCGGCAGCACUUGAUACAGAACGGGGGUUUCAUUGCUAAA_AA_AAGUAAGAAUA__AUGUGCUUAGUCUUGA_U_U__U_______ ..(((((.((..(((.(((.(((((((.....))).))))..)))...)))..)).)))))........................................................ (-15.49 = -15.87 + 0.38)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:12:48 2011