| Sequence ID | dm3.chr2R |
|---|---|
| Location | 12,118,756 – 12,118,876 |
| Length | 120 |
| Max. P | 0.607776 |
| Location | 12,118,756 – 12,118,876 |
|---|---|
| Length | 120 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 89.83 |
| Shannon entropy | 0.17509 |
| G+C content | 0.55000 |
| Mean single sequence MFE | -35.98 |
| Consensus MFE | -31.00 |
| Energy contribution | -32.12 |
| Covariance contribution | 1.12 |
| Combinations/Pair | 1.11 |
| Mean z-score | -1.42 |
| Structure conservation index | 0.86 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.24 |
| SVM RNA-class probability | 0.607776 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 12118756 120 + 21146708 GAGCACAAGCCACAGUCUCCUUCCAAGGGAGAUGCUCGUAUUGUUCCGGCAAGAUCCAGAACUUAUACACGCACCUUGGAUCCCGAGGAAGUGGUUAUCCUUAAGCGUGAAUCCGCCAAG .......((((((.(((((((.....)))))))((..((((.((((.((......)).))))..))))..)).((((((...))))))..))))))........(((......))).... ( -36.50, z-score = -2.05, R) >droSim1.chr2R 10858468 120 + 19596830 GAGCACAAGCCCCCGUCUCCUUCCAAGGGAGAUGCUCGUGUUGUUCCGGCGAGAGCCAGAACUUAUACCCGCACCUUGGAUCCCGAGGAAGUGGUUAUCCUUAAGCGUGAAUCCGCCAAG .(((((.(((....(((((((.....)))))))))).)))))((((.(((....))).))))..(((.((((.((((((...))))))..)))).)))......(((......))).... ( -42.70, z-score = -3.07, R) >droSec1.super_1 9617871 120 + 14215200 GAGCACAAGCCCCCGUCUCCUUCCAAGGGAGAUGCUCGUGUUGUUCCAGCAAGAUCCAGAACUUACACCCGCACCUUGGAUCCCGAGAAAGUGGUUAUCCUUAAGCGUGAAUCCGCCAAG .......((((.(..((((..(((((((....(((..((((.((((............))))..))))..))))))))))....))))..).))))........(((......))).... ( -30.30, z-score = -0.93, R) >droYak2.chr2R 4275609 120 - 21139217 GAGCACAAGUCCAACUCUCCUGGCAAAGGCGACGCUCGUGCUAUUCCGGCAAGGGCCAGAACUUAUACCCGCACCUUGGAUCCCGAGGAAGUGGUCGUUCUCAAGCGUGAAUCCGCCAAG (((.((((((.(...((.(((.....))).)).((((.((((.....)))).))))..).))))....((((.((((((...))))))..))))..)).)))..(((......))).... ( -33.50, z-score = 0.61, R) >droEre2.scaffold_4845 8849807 120 - 22589142 GAGCACAAGUCCAACUCUCUUUCCAAAGGAGAUGCUCGUGCUGUUCCGGCAAGAGCCAGAACUUAUACCCGCACCUUGGAUCCCGAGGAAGUGGUCAUCCUCAAGCGUGCAUCCGCCAAG ..((((..((((((.((((((.....))))))(((..(((..((((.(((....))).))))...)))..)))..))))))...(((((.(....).)))))....)))).......... ( -36.90, z-score = -1.64, R) >consensus GAGCACAAGCCCCAGUCUCCUUCCAAGGGAGAUGCUCGUGUUGUUCCGGCAAGAGCCAGAACUUAUACCCGCACCUUGGAUCCCGAGGAAGUGGUUAUCCUUAAGCGUGAAUCCGCCAAG .(((((.(((....(((((((.....)))))))))).)))))((((.(((....))).))))......((((.((((((...))))))..))))..........(((......))).... (-31.00 = -32.12 + 1.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:26:43 2011