| Sequence ID | dm3.chr2R |
|---|---|
| Location | 12,117,570 – 12,117,636 |
| Length | 66 |
| Max. P | 0.740936 |
| Location | 12,117,570 – 12,117,636 |
|---|---|
| Length | 66 |
| Sequences | 6 |
| Columns | 66 |
| Reading direction | reverse |
| Mean pairwise identity | 77.63 |
| Shannon entropy | 0.43450 |
| G+C content | 0.44596 |
| Mean single sequence MFE | -18.05 |
| Consensus MFE | -12.50 |
| Energy contribution | -13.00 |
| Covariance contribution | 0.50 |
| Combinations/Pair | 1.31 |
| Mean z-score | -1.17 |
| Structure conservation index | 0.69 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.55 |
| SVM RNA-class probability | 0.740936 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 12117570 66 - 21146708 ACAAUCAGCUGAUCCGACAGUGCUGAAAAGGGCUGGCAUGUUUAAAUGCAACUGGUAGGUAUUAUU .......(((...(((.((((.((....)).))))((((......))))...)))..)))...... ( -17.60, z-score = -1.37, R) >droEre2.scaffold_4845 8848623 64 + 22589142 ACAAUCAGCUGAUUCGCCAGUGCUGAAAAGGGCCGGCAUGUUUGAAUGCAACUGGUAGGUAUUA-- .(.(((((.(((((((...((((((........))))))...))))).)).))))).)......-- ( -17.20, z-score = -0.44, R) >droYak2.chr2R 4274425 64 + 21139217 ACAAUCAGCUGAUCCGCCAGUGCUGCAAAGGGCUGGCAUGCUUAAAUGCAACUGGUAGGUAUUU-- .......(((...((((((((.((....)).)))))).(((......)))...))..)))....-- ( -21.30, z-score = -1.19, R) >droSec1.super_1 9616704 64 - 14215200 ACAAUCAGCUGAUCCGCCAGUGCUGAAAAGAGCUGGCAUGCUUAAAUGCAACUGGUAGGUAUUA-- .......(((...((((((((.((....)).)))))).(((......)))...))..)))....-- ( -20.70, z-score = -1.89, R) >droSim1.chr2R 10857297 64 - 19596830 ACAAUCAGCUGAUCCGCCAGUGCUGAAAAGAGCUGGCAUGCUUAAAUGCAACUGGUAGGUAUUA-- .......(((...((((((((.((....)).)))))).(((......)))...))..)))....-- ( -20.70, z-score = -1.89, R) >droGri2.scaffold_15245 16222047 51 + 18325388 ACGAACAGCUGAUGUG-CAGUGUUCGUAAAUGCAGCUAUUGGUAAGUUUAUU-------------- (((((((.(((.....-)))))))))).((((.((((.......))))))))-------------- ( -10.80, z-score = -0.25, R) >consensus ACAAUCAGCUGAUCCGCCAGUGCUGAAAAGGGCUGGCAUGCUUAAAUGCAACUGGUAGGUAUUA__ ...(((((.......((((((.((....)).)))))).(((......))).))))).......... (-12.50 = -13.00 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:26:42 2011