| Sequence ID | dm3.chr2R |
|---|---|
| Location | 12,071,075 – 12,071,186 |
| Length | 111 |
| Max. P | 0.621315 |
| Location | 12,071,075 – 12,071,186 |
|---|---|
| Length | 111 |
| Sequences | 15 |
| Columns | 132 |
| Reading direction | forward |
| Mean pairwise identity | 67.44 |
| Shannon entropy | 0.69007 |
| G+C content | 0.38940 |
| Mean single sequence MFE | -21.88 |
| Consensus MFE | -11.95 |
| Energy contribution | -11.60 |
| Covariance contribution | -0.35 |
| Combinations/Pair | 1.55 |
| Mean z-score | -0.30 |
| Structure conservation index | 0.55 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.27 |
| SVM RNA-class probability | 0.621315 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 12071075 111 + 21146708 ------------AUAUAUUUUAAUUGUCAUCCG---UUUUCUUGCAGAUUUUCACAAAGCGCAUCCGUACGUAAUUAGCGGUAGCGUAGAUCAAACAGUAAAGGUCUGGGAAUGUCGUUAAAUUAA------ ------------...((.((((((.(.((((((---....)...((((((((.((...((((..((((.........))))..)))).(......).)).)))))))))).))).))))))).)).------ ( -20.50, z-score = -0.44, R) >droSim1.chr2R 10809081 114 + 19596830 ------------AUAUAUUUUAAUUGCCAUCCGUCGUUUCCUUGCAGAUUUUCACAAAGCGCAUCCGUACGUAAUUAGCGGUAGCGUAGAUCAAACAGUUAAGGUCUGGGAAUGUCGUUAAAUUAA------ ------------.......((((((......((.(((((((.................((((..((((.........))))..))))(((((..........)))))))))))).))...))))))------ ( -23.20, z-score = -0.63, R) >droSec1.super_1 9570395 114 + 14215200 ------------AUAUAUUUUAAUUGCCAUCCGUCGUUUCCUUGCAGAUUUUCACAAAGCGCAUCCGUACGUAAUUAGCGGUAGCGUAGAUCAAACAGUUAAGGUCUGGGAAUGUCGUUAAAUUAA------ ------------.......((((((......((.(((((((.................((((..((((.........))))..))))(((((..........)))))))))))).))...))))))------ ( -23.20, z-score = -0.63, R) >droYak2.chr2R 4227486 111 - 21139217 ------------AUAUUUUUUAUUUACCAUGCG---UUUCCUUGCAGAUUUUCACAAAGCGCAUCCGUACGUUAUUAGCGGUAGCGUAGAUCAAACAGUUAAGGUCUGGGAAUGUCGUUAAAUUAA------ ------------.........(((((..(((((---(((((.................((((..((((.........))))..))))(((((..........)))))))))))).))))))))...------ ( -21.40, z-score = -0.32, R) >droEre2.scaffold_4845 8802183 109 - 22589142 --------------GUAUUUUAAUUACCAUGCG---UUUCCUUGCAGAUUUUCACAAAGCGCAUCCGUACGUUAUUAGCGGUAGCGUAGAUCAAACAGUUAAAGUCUGGGAAUGUCGUUAAAUUAA------ --------------.....((((((...(((((---(((((....(((((((.((...((((..((((.........))))..)))).(......).)).)))))))))))))).)))..))))))------ ( -22.50, z-score = -0.80, R) >droAna3.scaffold_13266 12040943 120 - 19884421 ----------UCGAACAUAAAAUA-UAAUGUA-UUAUUUCGUUGCAGAUUUUCACAAAGCGCAUCCGUACGUCAUUAGCGGUAGCGUAGAUCAAACAGUUAAGGUCUGGGAGUGUCGUUAAAGAGCUGGCAA ----------.((((.((((.((.-....)).-))))))))((.((((((((.((...((((..((((.........))))..)))).(......).)).)))))))).)).(((((((....))).)))). ( -22.50, z-score = 0.67, R) >dp4.chr3 15504516 100 - 19779522 -----------------------A-UA-UAUU-UUAUUUCCUUGCAGAUUUUCACAAGGCGCAUCCGUACGUCAUCAGCGGCAGUGUGGAUCAAACAGUUAAGGUCUGGGAGUGUCGUUAAAGCAA------ -----------------------.-..-..((-(((...((((.((((((((.((.....(.(((((((((((......))).))))))))).....)).)))))))).))).)....)))))...------ ( -21.30, z-score = -0.27, R) >droPer1.super_2 4572814 100 - 9036312 -----------------------A-UA-UAUU-UUAUUUCCUUGCAGAUUUUCACAAGGCGCAUCCGUACGUCAUCAGCGGCAGUGUGGAUCAAACAGUUAAGGUCUGGGAGUGUCGUUAAAGCAA------ -----------------------.-..-..((-(((...((((.((((((((.((.....(.(((((((((((......))).))))))))).....)).)))))))).))).)....)))))...------ ( -21.30, z-score = -0.27, R) >droVir3.scaffold_12875 4415317 119 + 20611582 ---UUAUAGUUUGUUCUUAACACAUUUUCUUCUUUUUCUUUUUUUAGAUUUUCACAAAGCGCAUCCGUAUGUCAUUUCCGGCAGCGUAGAUCAAACAGUUAAAGUUUGGGAAUGUCGUUAGG---------- ---............(((((((((((..(..((((..((.(((...(((((.......((((..(((...........)))..)))))))))))).))..))))...)..))))).))))))---------- ( -22.91, z-score = -2.06, R) >droMoj3.scaffold_6496 13254995 101 + 26866924 ---------------------UUGUAAUUCACAAUAUUUUAUUACAGAUUUUCACAAAGCGCAUCCGUAUGUCAUCUCUGGUAGCGUAGAUCAAUCAGUUAAAGUUUGGGAAUGUCGUUAAG---------- ---------------------.((((((............))))))(((.(((.((((((((..(((...........)))..)))).((....))........)))).))).)))......---------- ( -13.60, z-score = 0.54, R) >droGri2.scaffold_15112 3332496 105 - 5172618 --------------UCUUUAUA-AUGAUUUUCGUUUU--UUAUUUAGAUUUUCACAAAGCGCAUCCGUAUGUCAUUUCCGGCAGCGUCGAUCAAACAGUUAAAGUUUGGGAAUGUCGUUAGG---------- --------------......((-(((((.(((.....--...................((((..(((...........)))..))))...((((((.......))))))))).)))))))..---------- ( -18.40, z-score = -0.45, R) >anoGam1.chr3L 33362612 126 + 41284009 UGUUGUUUCUCUACUUAAAUUGCUACCUCCUCUCUUUUCCUUCGCAGAUAUGCAUAAGUCCCAUCCUUACGUCAUAUCCGGCAGCGUGGACACGACGGUUAAAGUUUGGGAGUGCCGCUAAGUCAA------ ............(((((....((...(((((..((((.((.(((((....)))....((((.((.((..((.......))..)).))))))..)).))..))))...))))).))...)))))...------ ( -25.70, z-score = 0.47, R) >apiMel3.Group6 13890419 112 + 14581788 --------AUAUAUUGAUGAAUUGCUAAUAUAAUCAUAUUUUUGUAGAUUUUCACAAAAGCCAUCCUUACGUGGUCACCGGUAGUGUCGAUCAAACGGUGAAGAUCUGGGAGUGCCGCUA------------ --------.(((((((.........)))))))........(((.(((((((((......(((((......))))).((((....((.....))..))))))))))))).)))........------------ ( -21.70, z-score = 0.71, R) >droWil1.scaffold_180745 2400972 110 - 2843958 ----------------UAUACUUAAUAUAUUCCCCUCCUUUUUGCAGAUUUUCACAAAGCGCAUCCGUAUGUGAUCAGCGGUAGCGUGGAUCAAACAGUUAAAGUUUGGGAAUGUCGUUAAAUGGA------ ----------------.....(((((((((((((...((((..........((.....((((..((((.((....))))))..)))).))..........))))...)))))))).))))).....------ ( -23.85, z-score = -0.45, R) >triCas2.ChLG8 3075279 106 - 15773733 -----------------GUUUGUU--CUGAUUGGUGGUCGUUU-CAGAUUUCCACAAAUCACAUCCUUAUGUGAUUUCGGGGAGUGUAGAUCUAACGGUGAAAGUGUGGGAAUGCCGUUAAGUUAU------ -----------------.......--....((..(((.(((((-((.((((((..(((((((((....)))))))))..)))))).)..(((....))).........)))))))))..)).....------ ( -26.10, z-score = -0.59, R) >consensus _______________UAUUUUAUUUUAUAUUCGUUAUUUCCUUGCAGAUUUUCACAAAGCGCAUCCGUACGUCAUUAGCGGUAGCGUAGAUCAAACAGUUAAGGUCUGGGAAUGUCGUUAAAUUAA______ .........................................((.((((((((.((...((((..(((...........)))..)))).(......).)).)))))))).))..................... (-11.95 = -11.60 + -0.35)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:26:35 2011