| Sequence ID | dm3.chr2R |
|---|---|
| Location | 12,052,293 – 12,052,394 |
| Length | 101 |
| Max. P | 0.728324 |
| Location | 12,052,293 – 12,052,394 |
|---|---|
| Length | 101 |
| Sequences | 6 |
| Columns | 113 |
| Reading direction | reverse |
| Mean pairwise identity | 74.21 |
| Shannon entropy | 0.44644 |
| G+C content | 0.58625 |
| Mean single sequence MFE | -38.75 |
| Consensus MFE | -21.22 |
| Energy contribution | -21.58 |
| Covariance contribution | 0.37 |
| Combinations/Pair | 1.31 |
| Mean z-score | -1.58 |
| Structure conservation index | 0.55 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.52 |
| SVM RNA-class probability | 0.728324 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 12052293 101 - 21146708 AAUGCCGGAGGAGGAGGAGGAUCCUUGAACGCC--AGCCGGUGGAUGUGAGGCAGACAGCGGAUAGUGCAAUGCAGCCAUAUCCUCCUCGUCCACAUCCGCAU---------- .((((.((((((.(((((((((..(((..(((.--..(((.((..((.....))..)).)))...))).....)))....))))))))).)))...)))))))---------- ( -40.10, z-score = -1.88, R) >droSim1.chr2R 10790363 101 - 19596830 AAUACCGGAGGAGGAGGAGGAUCCCUGAACGCC--AGCCGGUGGAUGCGAGGCAGACAGCGGGUAGUGCAAUGCAGCCAUAUCCUCCUCGUCCACAUCCGCAU---------- .....(((((((.(((((((((..(((..(((.--(.(((.((..(((...)))..)).))).).))).....)))....))))))))).)))...))))...---------- ( -42.30, z-score = -2.33, R) >droSec1.super_1 9551641 101 - 14215200 AAUGCCGGAGGAGGAGGAGGAUCCCUGAACGCC--AGCCGGUGGAUGUGAGGCAGACAGCGGGUAGUGCAAUGCAGCCAUAUCCUCCUCAUCCACAUCCGCAU---------- .((((.((((((.(((((((((..(((..(((.--(.(((.((..((.....))..)).))).).))).....)))....))))))))).)))...)))))))---------- ( -41.00, z-score = -1.75, R) >droYak2.chr2R 4208418 95 + 21139217 AAUGCCGGAGGAGGA------UCCCAAGCCGCC--AGCUGGUGGAUGUGAGGCAGCCAGCGGAUAGUGCAAUGCAGCCAUAUCCUCCUCGUCCACAUCCGCAU---------- .((((..((((((((------(..((..(((((--....)))))...)).(((.((..(((.....)))...)).)))..)))))))))(....)....))))---------- ( -34.70, z-score = -0.76, R) >droEre2.scaffold_4845 8783238 95 + 22589142 AAUGCCGGAGGAGGAGG------CCUGUACGCC--AGCCGGUGGAUGCGAGGCAGCCAGUGGGUAGUGCAAUGCAGCCAUAUCCUCCUCGUCCACAUCCGCAU---------- .((((..((((((((((------(.(((((((.--(.(((.(((.(((...))).))).))).).)))...)))))))...))))))))(....)....))))---------- ( -37.10, z-score = -0.53, R) >droWil1.scaffold_180701 3571876 105 + 3904529 GGCGGCAGCAUGGGA--------UUUGGAUGACGAGGCCACUGCAUGAGAGAAUUCCAAUGGAAUAUGCAAAGAGGCGAAAUCCUCAUUAUCGAUAUCACCGCCGCCGCCAUU ((((((.((..((((--------(.(.(((((.((((((.((((((......(((((...)))))))))..)).)))(....)))).))))).).))).)))).))))))... ( -37.30, z-score = -2.22, R) >consensus AAUGCCGGAGGAGGAGG____UCCCUGAACGCC__AGCCGGUGGAUGUGAGGCAGACAGCGGAUAGUGCAAUGCAGCCAUAUCCUCCUCGUCCACAUCCGCAU__________ .((((.((((((.((((.............(((...((........))..))).......(((((..((......))..))))).)))).)))...))))))).......... (-21.22 = -21.58 + 0.37)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:26:34 2011