| Sequence ID | dm3.chr2R |
|---|---|
| Location | 12,025,660 – 12,025,792 |
| Length | 132 |
| Max. P | 0.612577 |
| Location | 12,025,660 – 12,025,792 |
|---|---|
| Length | 132 |
| Sequences | 6 |
| Columns | 148 |
| Reading direction | reverse |
| Mean pairwise identity | 67.67 |
| Shannon entropy | 0.54475 |
| G+C content | 0.32901 |
| Mean single sequence MFE | -27.44 |
| Consensus MFE | -11.92 |
| Energy contribution | -11.57 |
| Covariance contribution | -0.36 |
| Combinations/Pair | 1.48 |
| Mean z-score | -1.49 |
| Structure conservation index | 0.43 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.25 |
| SVM RNA-class probability | 0.612577 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 12025660 132 - 21146708 UUUUCGGUCCCAGAAAAAUUAAACGCAAUCGAGGAAAGUGAUUUAAAAUGUUUCUUUAUUGCCCCGGAUGAUUAC-----------CUUAUUUGCUAAACAAUUAGUUUGGUUUAUUCUUAGCCAAAUAUCGAUGGACCAAUA----- .....(((((..((..........(((((.((((((.((........)).)))))).)))))..(((((((....-----------.)))))))...........((((((((.......)))))))).))...)))))....----- ( -28.60, z-score = -1.54, R) >droYak2.chr2R 4181508 131 + 21139217 -AUUCCAUGCCAGAAAAAUCGAACGCAGUGAAGGAAAUUGAUUUAAAAUGUUUCUUUAUUGCCCCGGAUGAUUUC-----------CUUAGUUGCUAAACAAUUAGUUUGGUUUAUUCUUAGCCAAAUAUCGACGUACCAAUA----- -.......((.((((((((((((((((((((((((((((.......))).))))))))))))...(((.....))-----------).((((((.....))))))))))))))).))))..))....................----- ( -28.00, z-score = -1.83, R) >droSec1.super_1 9521163 132 - 14215200 GUUCCGUUCCCAAAAAAAUCGAACGAAAUAAAGGAAAGUGAUUUUAAAUGUUUCUUUAUUGCCCCGGAUGAUUUC-----------CUUAGUUGCUAAACAAUUAGUUUGGUUUAUUCUUAGCCAAAUAUCGAUGGACCAAUA----- (.((((((.......((((((..((.((((((((((.((........)).))))))))))....))..)))))).-----------..((((((.....))))))((((((((.......))))))))...)))))).)....----- ( -27.10, z-score = -1.45, R) >droSim1.chr2R 10763993 132 - 19596830 GUUCUGUUCCCAAAAAAGUCGAACGCAAUAGAGGAAAGUGAUUUUAAAUGUUUCUUUAUUGCCCCGGAUGAUUUC-----------CUUAGUUGCUAAACAAUUAGUUUGGUUUAUUCUUAGCCAAAUAUCGAUGGACCAAUA----- ....((.(((.......(((((..((((((((((((.((........)).))))))))))))...(((.....))-----------).((((((.....))))))((((((((.......)))))))).)))))))).))...----- ( -31.01, z-score = -2.20, R) >dp4.chr3 18646320 143 - 19779522 UUGUCAAUGUCAAACGAAAUAAGUACAUUGGGUAUUAUUUUUUUUUAA--AUUCUUUAUUGCCCCAGUAGUCCUCAAUUGUCAAAUCAUAUUUGUCACAU-AUUUGUUUGCCCUAUCUUUGGGUUAUUCCUAA--GACGAAUAUCGAU (((.((((.((....))......(((...(((((.((...........--......)).)))))..))).......)))).)))(((((((((((((((.-...)))..((((.......)))).........--))))))))).))) ( -24.03, z-score = -0.78, R) >droPer1.super_34 593311 143 - 916997 UUGUCAAUCUCAAAUGAAAUAAGUACAUUGGGUAUUAUUUUUUUGAAA--AUUCUUUAUUGCCCCAGUAGUCCUCAAUUGUCAAAUCAUAUUUGUCACAU-AUUUGUUUGCCCUAUCUUUGGGUUAUUCCUAA--GACGAAUAUCGAU (((.((((.(((((.(((((((.(((.....)))))))))))))))..--.......(((((....))))).....)))).)))(((((((((((((((.-...)))..((((.......)))).........--))))))))).))) ( -25.90, z-score = -1.15, R) >consensus UUUUCGAUCCCAAAAAAAUCAAACGCAAUGGAGGAAAGUGAUUUUAAAUGUUUCUUUAUUGCCCCGGAUGAUUUC___________CUUAGUUGCUAAACAAUUAGUUUGGUUUAUUCUUAGCCAAAUAUCGAUGGACCAAUA_____ ........................((((((((((((..(........)..))))))))))))...........................................((((((((.......)))))))).................... (-11.92 = -11.57 + -0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:26:33 2011