| Sequence ID | dm3.chr2R |
|---|---|
| Location | 12,024,898 – 12,024,950 |
| Length | 52 |
| Max. P | 0.984145 |
| Location | 12,024,898 – 12,024,950 |
|---|---|
| Length | 52 |
| Sequences | 3 |
| Columns | 52 |
| Reading direction | forward |
| Mean pairwise identity | 93.59 |
| Shannon entropy | 0.08830 |
| G+C content | 0.59615 |
| Mean single sequence MFE | -20.07 |
| Consensus MFE | -20.41 |
| Energy contribution | -19.97 |
| Covariance contribution | -0.44 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.92 |
| Structure conservation index | 1.02 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.16 |
| SVM RNA-class probability | 0.984145 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 12024898 52 + 21146708 AGCUUACGGGGACGGGGACACCUUGCUCAGUUGGGCGGACAAGUUCCCGAUG ......((((((((....)...((((((....))))))....)))))))... ( -20.20, z-score = -1.95, R) >droSec1.super_1 9520398 52 + 14215200 AGCUUACGGGGAUGGGGACACCUUGCUCAGUUGGGCUAACAAGUCCCCGAUG ......((((((((((....))).((((....))))......)))))))... ( -20.00, z-score = -1.84, R) >droSim1.chr2R 10763228 52 + 19596830 CGCUUACGGGGAUGGGGACACCUUGCUCAGUUGGGCUAACAAGUCCCCGAUG ......((((((((((....))).((((....))))......)))))))... ( -20.00, z-score = -1.97, R) >consensus AGCUUACGGGGAUGGGGACACCUUGCUCAGUUGGGCUAACAAGUCCCCGAUG ......((((((((((....))).((((....))))......)))))))... (-20.41 = -19.97 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:26:32 2011