| Sequence ID | dm3.chr2L |
|---|---|
| Location | 337,339 – 337,391 |
| Length | 52 |
| Max. P | 0.682366 |
| Location | 337,339 – 337,391 |
|---|---|
| Length | 52 |
| Sequences | 5 |
| Columns | 52 |
| Reading direction | forward |
| Mean pairwise identity | 97.69 |
| Shannon entropy | 0.04165 |
| G+C content | 0.41923 |
| Mean single sequence MFE | -6.76 |
| Consensus MFE | -6.92 |
| Energy contribution | -6.76 |
| Covariance contribution | -0.16 |
| Combinations/Pair | 1.10 |
| Mean z-score | -0.81 |
| Structure conservation index | 1.02 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.41 |
| SVM RNA-class probability | 0.682366 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 337339 52 + 23011544 CACACAUAUAAAAAGCAACUCUCGAUGGCAUUCACUUAAAACGUCAGGUGCA ..............(((.(.((.((((..............)))))))))). ( -6.44, z-score = -0.73, R) >droSim1.chr2L 357009 52 + 22036055 CGCACACAUAAAAAGCAACUCUCGAUGGCAUUCACUUAAAACAUCAGGUGCA ..............(((.(.((.((((..............)))))))))). ( -6.84, z-score = -0.82, R) >droSec1.super_14 334660 52 + 2068291 CGCACACAUAAAAAGCAACUCUCGAUGGCAUUCACUUAAAACAUCAGGUGCA ..............(((.(.((.((((..............)))))))))). ( -6.84, z-score = -0.82, R) >droYak2.chr2L 334052 52 + 22324452 CGCACACAUAAAAAGCAACUCUCGAUGGCAUUCACUUAAAACAUCAGGUGCA ..............(((.(.((.((((..............)))))))))). ( -6.84, z-score = -0.82, R) >droEre2.scaffold_4929 393040 52 + 26641161 CGCACACAUAAAAAGCAACUCUCGAUGGCAUUCACUUAAAACAUCAGGUGCA ..............(((.(.((.((((..............)))))))))). ( -6.84, z-score = -0.82, R) >consensus CGCACACAUAAAAAGCAACUCUCGAUGGCAUUCACUUAAAACAUCAGGUGCA ..............(((.(.((.((((..............)))))))))). ( -6.92 = -6.76 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:05:33 2011