| Sequence ID | dm3.chr2R |
|---|---|
| Location | 12,023,284 – 12,023,423 |
| Length | 139 |
| Max. P | 0.818064 |
| Location | 12,023,284 – 12,023,423 |
|---|---|
| Length | 139 |
| Sequences | 5 |
| Columns | 149 |
| Reading direction | reverse |
| Mean pairwise identity | 89.29 |
| Shannon entropy | 0.18800 |
| G+C content | 0.38774 |
| Mean single sequence MFE | -36.85 |
| Consensus MFE | -27.93 |
| Energy contribution | -29.41 |
| Covariance contribution | 1.48 |
| Combinations/Pair | 1.10 |
| Mean z-score | -2.15 |
| Structure conservation index | 0.76 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.79 |
| SVM RNA-class probability | 0.818064 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 12023284 139 - 21146708 CGAUUCUUAAGCUACGACUAUCGAU---------UAUCGGUGCAGUUG-AAAAUACAUUCUUGUGGCGACUAGGUGUUAAACCCUUAUAGGUUCGCUCCAGAAAGUAUUCUACAUUGCGACCGAAACUAAAAUAAUUGAUUAAAAACAA ...................((((((---------((((((((((((..-..(((((.((((.(..((((((((((.....)))....)))..))))..))))).)))))....))))).)))))........))))))))......... ( -31.20, z-score = -1.69, R) >droEre2.scaffold_4845 8754630 148 + 22589142 CGAUUCUUAAGCUACGACUAUCGAUUAAACCAGCUAUCGGAGCAGGUG-GAGAUACAUUCUGUGAGCGACCAGGUGUAAAGCCCUUAUAGUUGCGCUCCAGAAAGUAUUCUACAUCGCAACCGCAAUUAAAAUAAUUGAUUAACAACAA ...............(...((((((((..........(((.((..(((-(((.(((.(((((.(((((..(((.(((((.....))))).))))))))))))).)))))))))...))..))).........))))))))...)..... ( -35.91, z-score = -1.66, R) >droYak2.chr2R 4179139 149 + 21139217 CGAUUCUUAAGCUACGACUAUCGAUUAAAACAGCUAUCGGUGCAGGUGAAAGAUACAUUCUGUGGGUGACCAGGUGUUAAGCCCUUAUAGUUUCGCUCCAGAAAGUAUUCUACAUUGCAACCGACAUUAAAAUAAUUGAUUAAAAACAA ...................((((((((.........(((((((((.((.(..((((.((((.(((....)))((.((.((((.......)))).)).)))))).))))..).)))))).)))))........))))))))......... ( -33.73, z-score = -1.27, R) >droSec1.super_1 9518740 148 - 14215200 CGAUUCUUAAGCUACGACUAUCGAUGAAACCAUCUAUCGGUGCAGUUG-AAGAUACAUUCUUGGGGCGACUAGGUGUUAAAGCCUUAUAGGUUCGCUCCAGAAAGUAUUCUACAUUGCGACCGAAACUAAAGUAAUUGAUUAAAAACGA ((((((((.((...........((((....))))..((((((((((.(-.((((((.((((.(((((((((((((......))))....)).))))))))))).))).))).)))))).)))))..)).))).)))))........... ( -43.20, z-score = -3.20, R) >droSim1.chr2R 10761653 148 - 19596830 CGAUUCUUAAGCUACGACUAUCGAUUAAACCAGCUAUCGGUGCAGUUG-AAGAUACAUUCUUGGGGCGACUAGGUGUUAAAGCCUUAUAGGUUCGCUCCAGAAAGUAUUCUACAUUGCGACCGAAACUAAAAUAAUUGAUUAAAAACAA ...................((((((((....((...((((((((((.(-.((((((.((((.(((((((((((((......))))....)).))))))))))).))).))).)))))).)))))..))....))))))))......... ( -40.20, z-score = -2.91, R) >consensus CGAUUCUUAAGCUACGACUAUCGAUUAAACCAGCUAUCGGUGCAGUUG_AAGAUACAUUCUUGGGGCGACUAGGUGUUAAACCCUUAUAGGUUCGCUCCAGAAAGUAUUCUACAUUGCGACCGAAACUAAAAUAAUUGAUUAAAAACAA ...................((((((((.........(((((((((.((.(..((((.((((.((((((((((((........)))....))).)))))))))).))))..).)))))).)))))........))))))))......... (-27.93 = -29.41 + 1.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:26:31 2011