| Sequence ID | dm3.chr2L |
|---|---|
| Location | 3,005,897 – 3,005,993 |
| Length | 96 |
| Max. P | 0.698262 |
| Location | 3,005,897 – 3,005,993 |
|---|---|
| Length | 96 |
| Sequences | 4 |
| Columns | 96 |
| Reading direction | reverse |
| Mean pairwise identity | 73.63 |
| Shannon entropy | 0.41774 |
| G+C content | 0.39780 |
| Mean single sequence MFE | -18.56 |
| Consensus MFE | -10.30 |
| Energy contribution | -9.86 |
| Covariance contribution | -0.44 |
| Combinations/Pair | 1.31 |
| Mean z-score | -1.69 |
| Structure conservation index | 0.55 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.44 |
| SVM RNA-class probability | 0.698262 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 3005897 96 - 23011544 UAUUAACCAAGCACUUGCACAUAUUUCUUUCCGUAGGGGGUUCUCCGAAAGAACAAUCCUAGGAAGGUCACAAAUUAGACCAAAUUAUCCCAAUUG ..........((....))..........((((.(((((.(((((.....)))))..)))))))))((((........))))............... ( -20.50, z-score = -1.68, R) >droSec1.super_5 1162998 89 - 5866729 ------CCAAGAACUUACAAAUACUUCUUUCACUAGGGGGUUCU-UAAGAGAACGAUCCUAGGAAGGUCACAAAUUAGACCAAAUUAUCCCAAUUG ------......................(((.((((((.(((((-....)))))..)))))))))((((........))))............... ( -20.20, z-score = -1.75, R) >droYak2.chr2L 3000843 84 - 22324452 ---------UAUGGACUAAAAUAUUUCUUUACCUA--GGGCUCC-CCAGAGAACAGCCCUAAGAAGGCCACAAAUUAGACCAAAUUAUCCCAAUAG ---------..(((.((((.......((((.(.((--(((((..-.........))))))).))))).......)))).))).............. ( -16.04, z-score = -1.56, R) >droEre2.scaffold_4929 3051828 93 - 26641161 UAUUGACAGCGAACAUUAAAAUAUUUCUCCCCCAA--GGGCUCU-CAAGAGAACGGCCCUAAGAAGGUCACAAAUUAGACCAAAUUAUCCCAAUAG (((((.............................(--(((((.(-(....))..)))))).....((((........)))).........))))). ( -17.50, z-score = -1.76, R) >consensus ______CCAAGAACAUUAAAAUAUUUCUUUCCCUA__GGGCUCU_CAAGAGAACAACCCUAAGAAGGUCACAAAUUAGACCAAAUUAUCCCAAUAG ........................(((((.......((((((...(....)...)))))))))))((((........))))............... (-10.30 = -9.86 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:12:46 2011