| Sequence ID | dm3.chr2R |
|---|---|
| Location | 11,943,674 – 11,943,781 |
| Length | 107 |
| Max. P | 0.619483 |
| Location | 11,943,674 – 11,943,781 |
|---|---|
| Length | 107 |
| Sequences | 4 |
| Columns | 109 |
| Reading direction | reverse |
| Mean pairwise identity | 78.23 |
| Shannon entropy | 0.34498 |
| G+C content | 0.40158 |
| Mean single sequence MFE | -20.71 |
| Consensus MFE | -13.59 |
| Energy contribution | -14.90 |
| Covariance contribution | 1.31 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.56 |
| Structure conservation index | 0.66 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.26 |
| SVM RNA-class probability | 0.619483 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 11943674 107 - 21146708 CCCAGUCAACCUAAUGCUAUAU--AUAUCUCGGUUUAAGUGAGUAAAACAUUUACCCCAUUUAAAAGUGGUUUCAAAAGUGUCAGGCACUUAAGAAAAUCGAAACCCCA ......................--.......((((((((((.((((.....))))..))))))))...((((((..(((((.....)))))..(.....))))))))). ( -18.30, z-score = -1.35, R) >droSec1.super_1 9442541 87 - 14215200 --------------------CU--AUAUCUCAGUUUAAGUGAGUAAAACAUUUACCCCAUUUAAAAGUGGUGUCAAAAGUGUCAGGCACUUAAGAAAAUCGAGACCCCA --------------------..--...((((..((((((((......((((((((.(((((....))))).))...))))))....))))))))......))))..... ( -17.10, z-score = -2.00, R) >droYak2.chr2R 4100368 92 + 21139217 ---------CCUAAUGC----U--UUAUCUCGGCUCAAGUGAGUAACACAUUUACCCCAUUUA--AGUGGUGUCAAAAGUGCCAGGCACUUAAGAAAAUCGAGACCCCA ---------........----.--...((((((((.(((((.....(((.(((((.((((...--.)))).)).))).))).....))))).))....))))))..... ( -19.30, z-score = -0.99, R) >droEre2.scaffold_4845 8677621 107 + 22589142 CCUAGUCAACCUGCUGUUAAGUGACUGACGCGGUUUAAGUGAGUGAAACAUUUACCCCAUUUA--AGUGGUGUCAAAAGUGUCAGGCACUUAAGAAAAUCGAGACCCCA ....(((.......(.(((((((.(((((((.......(((((((...))))))).((((...--.))))........))))))).))))))).).......))).... ( -28.14, z-score = -1.91, R) >consensus _________CCUAAUGC____U__AUAUCUCGGUUUAAGUGAGUAAAACAUUUACCCCAUUUA__AGUGGUGUCAAAAGUGUCAGGCACUUAAGAAAAUCGAGACCCCA ...........................(((((((((..((((((.....)))))).((((......))))..((..((((((...))))))..)))))))))))..... (-13.59 = -14.90 + 1.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:26:12 2011