| Sequence ID | dm3.chr2L |
|---|---|
| Location | 3,001,585 – 3,001,649 |
| Length | 64 |
| Max. P | 0.583945 |
| Location | 3,001,585 – 3,001,649 |
|---|---|
| Length | 64 |
| Sequences | 6 |
| Columns | 64 |
| Reading direction | forward |
| Mean pairwise identity | 92.71 |
| Shannon entropy | 0.14219 |
| G+C content | 0.47623 |
| Mean single sequence MFE | -16.11 |
| Consensus MFE | -15.57 |
| Energy contribution | -15.55 |
| Covariance contribution | -0.02 |
| Combinations/Pair | 1.20 |
| Mean z-score | -0.84 |
| Structure conservation index | 0.97 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.19 |
| SVM RNA-class probability | 0.583945 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 3001585 64 + 23011544 UAUAUCUUUCUGUUUAAUUGGGCGGUUUCGAGAUUUACGCGCGCCUGCCGCCAUCUGCAGAAUC .......((((((.......((((((..((.(.......).))...))))))....)))))).. ( -17.80, z-score = -1.21, R) >droSim1.chr2L 2960917 64 + 22036055 UAUAUCUUUCUGUUUAAUUGGGCGGUUUCGAGAUUUACGCGCGCCUGCCGCCAUCUGCAGAAUC .......((((((.......((((((..((.(.......).))...))))))....)))))).. ( -17.80, z-score = -1.21, R) >droSec1.super_5 1158720 64 + 5866729 UAUAUCUUUCUGUUUAAUUGGGCGGUUUCGAGAUUUACGCGCGCCUGCCGCCAUCUGCAGAAUC .......((((((.......((((((..((.(.......).))...))))))....)))))).. ( -17.80, z-score = -1.21, R) >droEre2.scaffold_4929 3047580 64 + 26641161 UAUAUCUUUCUGUUUAAUUGGGCGUCUUCGAGAUUUACGCGCGCCUGCCGCCAUCUGCAGAAUC .......((((((......((((((...((.......)).))))))..........)))))).. ( -12.49, z-score = 0.42, R) >droYak2.chr2L 2996423 64 + 22324452 UAUAUCUUUCUGUUUAAUUGGGCGGUUUCGAGAUUUACGCGCGCCUGCCGCCAUCUGCAGAAUC .......((((((.......((((((..((.(.......).))...))))))....)))))).. ( -17.80, z-score = -1.21, R) >droAna3.scaffold_12916 4423944 62 + 16180835 CAUUUUUCGUUGUUUAAUUGGGCGGUUUUUAGAUUUACGCGC--CUGCCGCCAUCUGCAAUAUC ........(((((.......((((((................--..))))))....)))))... ( -12.97, z-score = -0.65, R) >consensus UAUAUCUUUCUGUUUAAUUGGGCGGUUUCGAGAUUUACGCGCGCCUGCCGCCAUCUGCAGAAUC .......((((((.......((((((..((.(.......).))...))))))....)))))).. (-15.57 = -15.55 + -0.02)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:12:45 2011