| Sequence ID | dm3.chr2R |
|---|---|
| Location | 11,819,437 – 11,819,553 |
| Length | 116 |
| Max. P | 0.577407 |
| Location | 11,819,437 – 11,819,553 |
|---|---|
| Length | 116 |
| Sequences | 7 |
| Columns | 122 |
| Reading direction | forward |
| Mean pairwise identity | 65.12 |
| Shannon entropy | 0.68213 |
| G+C content | 0.39161 |
| Mean single sequence MFE | -29.34 |
| Consensus MFE | -7.53 |
| Energy contribution | -8.72 |
| Covariance contribution | 1.18 |
| Combinations/Pair | 1.52 |
| Mean z-score | -1.87 |
| Structure conservation index | 0.26 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.17 |
| SVM RNA-class probability | 0.577407 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 11819437 116 + 21146708 ---GAUACCAAUAUUUUGGUACUUUUGAGUAGAGCCGUCAAAACAUC-GAUGCUACUAUCGAUAGUAUC-GAACCGUGC-AUGGCGAUGAUAUCGAGAUAGUUGUGAGCAGUGGAAUCAGAC ---(((.(((.((((((((((((.......)).(((((((.....((-(((((((.......)))))))-))....)).-))))).....)))))))))).(((....)))))).))).... ( -29.40, z-score = -1.00, R) >droAna3.scaffold_13266 7977765 99 - 19884421 AGAAGUUCAAAAAGUUUAAUAGCUCGGAUUAGAGUC---------UC-AAUUCUCCCAUUGCAUUUACA-AAGAUGUGC-AUAUAUAUUAGAUACGGCUAGUAGAGAGCAU----------- .....................((((((...(((((.---------..-.))))).))..(((((.....-.....))))-)....((((((......))))))..))))..----------- ( -16.50, z-score = 0.05, R) >droEre2.scaffold_4845 8550642 115 - 22589142 ---GAUACCAAUAUUUUGGUACUUUUGCGUAGAGCUGUCAAAACAUC-GAUGCCACUAUCGAUAGUAUC-GAAC-GAGC-AUGGCGAUGAUAUCGAGAUAGUUGUGUGCAGUGGAAACAGAU ---..((((((....))))))...(((((((.(((((((.....(((-(.(((((((.(((((...)))-))..-.)).-.))))).)))).....))))))).)))))))((....))... ( -34.00, z-score = -2.30, R) >droYak2.chr2R 3976351 115 - 21139217 ---GAUACCAAUAUUUUGGUACUUUUGCGUAGAGCUGUCAAAACAUC-GAUGUCACUAUCGAUAGUAUC-GAAC-GAGC-ACGGCGAUGAUAUCGAGAUAGCUGUGCGCAGUGGAAACAGAC ---..((((((....))))))...(((((((.(((((((......((-(((((((...(((...((.((-....-))..-))..))))))))))))))))))).)))))))((....))... ( -42.80, z-score = -4.68, R) >droSec1.super_1 9319655 116 + 14215200 ---GAUACCAAUAUUUUGGUAGUUUUGAGUAGAGCCGUCAAAACAUC-GAUGCUACUAUCGAUAGUAUC-GAACCGUGA-AUGGCGAUGAUAUCGAGAUAGUUGUGAGCAGUGGAAACAGAC ---..((((((....))))))(((((((.((..(((((((.....((-(((((((.......)))))))-))....)).-)))))..))...)))))))............((....))... ( -32.90, z-score = -2.85, R) >droSim1.chr2R 10558085 116 + 19596830 ---GAUACCAAUAUUUUGGUACUUUUGAGUAGAGCCGUCAAAACAUC-GAUGCUACUAUCGAUAGUAUC-GAACCGUGC-AUGGCGAUGAUAUCGAGAUAGUUGUGAGCAGUGGAAACAGAC ---..((((((....)))))).((((((.((..(((((((.....((-(((((((.......)))))))-))....)).-)))))..))...)))))).............((....))... ( -30.90, z-score = -1.77, R) >droWil1.scaffold_180701 846849 97 - 3904529 ----------GAAAUUAACCAUUUGAUCAUGAAUUCAUGAGAAAAUCAGAUAUUCCAAAAUUUUGUAUCUGAUAUGUGGGAUAAUAGAUAGAUGUGGAUCAUUAAAG--------------- ----------........((((((..(((((....)))))..))(((((((((...........)))))))))..))))(((.(((......)))..))).......--------------- ( -18.90, z-score = -0.56, R) >consensus ___GAUACCAAUAUUUUGGUACUUUUGAGUAGAGCCGUCAAAACAUC_GAUGCUACUAUCGAUAGUAUC_GAACCGUGC_AUGGCGAUGAUAUCGAGAUAGUUGUGAGCAGUGGAAACAGAC .....(((...(((((((((((......)))..(((((.......((((((((...........))))))))........))))).......))))))))...)))................ ( -7.53 = -8.72 + 1.18)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:26:03 2011