| Sequence ID | dm3.chr2R |
|---|---|
| Location | 11,818,038 – 11,818,137 |
| Length | 99 |
| Max. P | 0.958855 |
| Location | 11,818,038 – 11,818,137 |
|---|---|
| Length | 99 |
| Sequences | 5 |
| Columns | 116 |
| Reading direction | forward |
| Mean pairwise identity | 73.78 |
| Shannon entropy | 0.43131 |
| G+C content | 0.33824 |
| Mean single sequence MFE | -25.89 |
| Consensus MFE | -13.19 |
| Energy contribution | -13.99 |
| Covariance contribution | 0.80 |
| Combinations/Pair | 1.19 |
| Mean z-score | -2.41 |
| Structure conservation index | 0.51 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.66 |
| SVM RNA-class probability | 0.958855 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 11818038 99 + 21146708 -GCUAAAAGGGCACUUAAAACCUUAAUCACUUGUAAUGAGCCUAAAUGGGUUUAAUGAACUUUACAAGUGAU--UAAUCAAAAUCUA------UAAGCAAUGUUUUGA-------- -(((.....)))..........(((((((((((((((((((((....))))))).......)))))))))))--)))(((((((...------........)))))))-------- ( -24.71, z-score = -3.49, R) >droEre2.scaffold_4845 8549175 115 - 22589142 GCUUAAAAGGCUAUUUAAAACCUUAUUCACUUGUAAUGCGCUUAAAUGGGUUUAAUGAACUCCGCGAAUGGGG-CAGCGAAUUACAAGUGAUUAAUGCAAAUCUGUAAGGGGUUGA (((.....)))...((((..(((((((((((((((((.((((.....((((((...)))).))((.......)-))))).))))))))))).............))))))..)))) ( -31.71, z-score = -2.44, R) >droYak2.chr2R 3974903 116 - 21139217 ACGAAAAAGGGCACUUAAAACCUUAUUCACUCGUAAUGAGCUUUAAUGGGUUUAAUGAACUCCACAAAUGGGGGCAGCGAAAUACAAGUGUGUUAUGCAAAUCUGUAAGGUUUUGA ..............((((((((((((....((((..(((((((....))))))))))).(((((....)))))...(((.(((((....))))).)))......)))))))))))) ( -27.60, z-score = -1.30, R) >droSec1.super_1 9318253 99 + 14215200 -GCUAAAAGGGCACUUAAAACCUUAUUCACUUGUAAUGAGCCUAAAUGGGUUUAAUGAACUUUACGAGUGAU--UAAUGAAAAUCUA------UAAGCAAAGUUUUGU-------- -(((..((((..........))))..(((((((((((((((((....))))))).......)))))))))).--.............------..)))..........-------- ( -22.11, z-score = -2.32, R) >droSim1.chr2R 10556687 99 + 19596830 -GCUAAAAGGUCACUUAAAACCUUAUUCACUUGUAAUGAGCCUAAAUGGGUUUAAUGAACUUUACAAGUGAU--UAAUGAAAAGCUA------CAAGCAAAGUUUUGA-------- -(((..(((((........)))))..(((((((((((((((((....))))))).......)))))))))).--.............------..)))..........-------- ( -23.31, z-score = -2.53, R) >consensus _GCUAAAAGGGCACUUAAAACCUUAUUCACUUGUAAUGAGCCUAAAUGGGUUUAAUGAACUUUACAAGUGAU__UAAUGAAAAACUA______UAAGCAAAGUUUUGA________ ......((((..........))))..(((((((((((((((((....))))))).......))))))))))............................................. (-13.19 = -13.99 + 0.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:26:01 2011