| Sequence ID | dm3.chr2R |
|---|---|
| Location | 11,816,790 – 11,816,898 |
| Length | 108 |
| Max. P | 0.500000 |
| Location | 11,816,790 – 11,816,898 |
|---|---|
| Length | 108 |
| Sequences | 5 |
| Columns | 117 |
| Reading direction | forward |
| Mean pairwise identity | 70.26 |
| Shannon entropy | 0.52193 |
| G+C content | 0.35524 |
| Mean single sequence MFE | -24.16 |
| Consensus MFE | -11.32 |
| Energy contribution | -11.68 |
| Covariance contribution | 0.36 |
| Combinations/Pair | 1.27 |
| Mean z-score | -1.29 |
| Structure conservation index | 0.47 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.01 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>dm3.chr2R 11816790 108 + 21146708 CCGGCAAACCUAACUUGCAUAAGUUUAUGCAGUUUAUUAACUGUAUAACGGUUAUACAUCUAAGCAAACU--UUUUUAAUUUUAAGGAU-----UCUAUAAGAGUAGAUGUGCUG-- .((((.((((.(((((....)))))(((((((((....)))))))))..))))..(((((((..(.....--((((((....)))))).-----.......)..)))))))))))-- ( -24.62, z-score = -2.13, R) >droEre2.scaffold_4845 8547867 115 - 22589142 CCGGCGAGCUCAACUUGCAUAAUUUCGUGCAGUUUGUUAACUGUUUACCGGUAAUGCAUCUAAGGAAUCUAACUAAGGAAUGCAAGUAGAUAUGUAUAUACAAGUAGAUAGACUG-- ..((((((((......((((......))))))))))))..((((((((..((((((((((((..(..(((......)))...)...))))..))))).)))..))))))))....-- ( -25.80, z-score = -0.53, R) >droYak2.chr2R 3973639 105 - 21139217 CCGGCGAACUCAACUUGCAUAAGUUCGUGCAGUUUGUUUGCUGUUCAGCGGUUAUGCAUCUAAGCAAACA--UUGCUGUUUUUAGAAA--------UAUGAAAGUAGAAAGACUG-- .((((((((..((((.((((......)))))))).))))))))(((.((..(((((..(((((..(((((--....))))))))))..--------)))))..)).)))......-- ( -27.40, z-score = -1.05, R) >droSec1.super_1 9317029 110 + 14215200 CCGGCAAACUUAACUUGCAUAAGUUUAUGCAGUUUGUAAUCUGUAAAGCGGUUAUACAUCUAAGCAAACU--UUUGUGAUUUUAAGGAU-----UCUAUGAAAGUAGAUGUGUGCUG .(((((..(((((.(..((.(((((..(((....((((..(((.....)))...)))).....)))))))--).))..)..)))))...-----(((((....)))))....))))) ( -26.00, z-score = -1.34, R) >droSim1.chr2R 10555460 84 + 19596830 CCGGCAAACUUAACUUGCAUAAGUUCAUGCAGUUUGUUAACUGUAUAACGGUUAUACAUCUAAGCAAACU--UUUGUGAUUUUAAG------------------------------- ........(((((.(..((.(((((..(((....(((((((((.....)))))).))).....)))))))--).))..)..)))))------------------------------- ( -17.00, z-score = -1.39, R) >consensus CCGGCAAACUUAACUUGCAUAAGUUCAUGCAGUUUGUUAACUGUAUAACGGUUAUACAUCUAAGCAAACU__UUUGUGAUUUUAAGGA______U_UAUAAAAGUAGAUAGACUG__ (((((((.......))))........((((((((....))))))))..))).................................................................. (-11.32 = -11.68 + 0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:26:00 2011