| Sequence ID | dm3.chr2R |
|---|---|
| Location | 11,800,571 – 11,800,621 |
| Length | 50 |
| Max. P | 0.811202 |
| Location | 11,800,571 – 11,800,621 |
|---|---|
| Length | 50 |
| Sequences | 5 |
| Columns | 50 |
| Reading direction | forward |
| Mean pairwise identity | 99.20 |
| Shannon entropy | 0.01444 |
| G+C content | 0.52400 |
| Mean single sequence MFE | -12.82 |
| Consensus MFE | -12.54 |
| Energy contribution | -12.74 |
| Covariance contribution | 0.20 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.42 |
| Structure conservation index | 0.98 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.77 |
| SVM RNA-class probability | 0.811202 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 11800571 50 + 21146708 ACUGUGCCAUCAGGUUCACCACAUAACGGUGAAUCGUCGGUCGUCUUUCG .....(((..(.((((((((.......)))))))))..)))......... ( -13.60, z-score = -1.75, R) >droSim1.chr2R 10538933 50 + 19596830 ACUGUGCCAUCAGGUUCACCACAUAACGGUGAAUCGUCGGUCGUCUUUCG .....(((..(.((((((((.......)))))))))..)))......... ( -13.60, z-score = -1.75, R) >droSec1.super_1 9300914 50 + 14215200 ACUGUGCCAUCAGGUUCACCACAUAACGGUGAAUCGUCGGUCGUCUUUCG .....(((..(.((((((((.......)))))))))..)))......... ( -13.60, z-score = -1.75, R) >droYak2.chr2R 3957155 50 - 21139217 ACUGUGCCAUCAGGUUCACCACAUAACGGUGAAUCGUCGGUCGUCUUUCG .....(((..(.((((((((.......)))))))))..)))......... ( -13.60, z-score = -1.75, R) >droEre2.scaffold_4845 8531505 50 - 22589142 ACUGUGCCAUCAGGUUCACCACAUAACGGCGAAUCGUCGGUCGUCUUUCG .....(((..(.(((((.((.......)).))))))..)))......... ( -9.70, z-score = -0.08, R) >consensus ACUGUGCCAUCAGGUUCACCACAUAACGGUGAAUCGUCGGUCGUCUUUCG .....(((..(.((((((((.......)))))))))..)))......... (-12.54 = -12.74 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:25:59 2011