| Sequence ID | dm3.chr2R |
|---|---|
| Location | 11,799,733 – 11,799,825 |
| Length | 92 |
| Max. P | 0.910519 |
| Location | 11,799,733 – 11,799,825 |
|---|---|
| Length | 92 |
| Sequences | 7 |
| Columns | 94 |
| Reading direction | forward |
| Mean pairwise identity | 81.40 |
| Shannon entropy | 0.36350 |
| G+C content | 0.42249 |
| Mean single sequence MFE | -26.68 |
| Consensus MFE | -14.89 |
| Energy contribution | -16.53 |
| Covariance contribution | 1.64 |
| Combinations/Pair | 1.27 |
| Mean z-score | -2.32 |
| Structure conservation index | 0.56 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.21 |
| SVM RNA-class probability | 0.910519 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 11799733 92 + 21146708 UUGUUUUUUUGGGCUUACUUUUAGUGCUCAUUCCGUGCUUCCCUGUUCGUUGGCGCAGCAAAAAUUAAAAGCAUUAAAAAUGCCCAGAGAAU-- ....((((((((((....((((((((((.......((((.(((........)).).)))).........))))))))))..)))))))))).-- ( -29.09, z-score = -3.48, R) >droSim1.chr2R 10538121 91 + 19596830 UUGUUUUUU-GGGCUUACUUUUAGUGCUCAUUCCGUGCUUCCCUGUUCGUUGGCGCAGCAAAAAUUAAAAGCAUUAAAAAUGCCCAGAGAAG-- ...((((((-((((....((((((((((.......((((.(((........)).).)))).........))))))))))..)))))))))).-- ( -29.29, z-score = -3.47, R) >droSec1.super_1 9295707 91 + 14215200 UUGUUUUUU-GGGCUUACUUUUAGUGCUCAUUCCGUGCUUCCCUGUUCGUUGGCGCAGCAAAAAUUAAAAGCAUUAAAAAUGCCCAGAGAAG-- ...((((((-((((....((((((((((.......((((.(((........)).).)))).........))))))))))..)))))))))).-- ( -29.29, z-score = -3.47, R) >droYak2.chr2R 3956410 91 - 21139217 UUGUUUUUU-GGGCUUACUUUUAGUGCUCGUUCCGUGCUUCCCUGUCCGUUGGCGCAGCAAAAAUUAAAAGCAUUAAAAAUGCCCAGGGAAG-- ...((((((-((((....((((((((((..(....((((.(((........)).).))))......)..))))))))))..)))))))))).-- ( -28.50, z-score = -2.37, R) >droEre2.scaffold_4845 8530738 91 - 22589142 UUGUUUUUU-GGGCUUACUUUUAGUGCUCAUUCCGUGCUUCCCCGUUCGUUGGCGCAGCAAAAAUUAAAAGCAUUAAAAAUGCCCAGGGAAG-- ...((((((-((((....((((((((((.......((((.(.(((.....))).).)))).........))))))))))..)))))))))).-- ( -28.89, z-score = -2.69, R) >droAna3.scaffold_13266 7963987 85 - 19884421 ----UUUUUUGGGCUUACUUUUAGUGCUCAUUCCGGGCGCUC---UCCGGCGGCGCAGCAAAAAUUAAAAGCAUUAAAAAGGCCCAAGGAGC-- ----((((((((((((..((((((((((.....((((.....---))))((......))..........)))))))))))))))))))))).-- ( -29.10, z-score = -1.72, R) >droWil1.scaffold_180699 796131 82 + 2593675 ------------UUUUUUUUCUUCUCCCCGGUUUUUGGGCUUUUACUCGACGGCGCAGCAAAAAUUAAAAGCAUUAAAAAUGCCCAUGGAACAG ------------............(((..((((((((((((((((.......((...))......))))))).))))))..)))...))).... ( -12.62, z-score = 0.97, R) >consensus UUGUUUUUU_GGGCUUACUUUUAGUGCUCAUUCCGUGCUUCCCUGUUCGUUGGCGCAGCAAAAAUUAAAAGCAUUAAAAAUGCCCAGGGAAG__ ....(((((.((((....((((((((((.......((((.(((........)).).)))).........))))))))))..)))).)))))... (-14.89 = -16.53 + 1.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:25:58 2011