Locus 4268

Sequence ID dm3.chr2R
Location 11,780,741 – 11,780,809
Length 68
Max. P 0.551483
window5848

overview

Window 8

Location 11,780,741 – 11,780,809
Length 68
Sequences 5
Columns 68
Reading direction reverse
Mean pairwise identity 97.06
Shannon entropy 0.04979
G+C content 0.31176
Mean single sequence MFE -9.44
Consensus MFE -9.44
Energy contribution -9.44
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -0.78
Structure conservation index 1.00
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.12
SVM RNA-class probability 0.551483
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr2R 11780741 68 - 21146708
UCACUUUCCUGUUAUAACUCUCAACUAAAUUGAUAUUGAGUGCUUUGGAUUCUUCUUGGUAUCAAAUU
.............................(((((((..((..............))..)))))))... (  -9.44, z-score =  -0.87, R)
>droEre2.scaffold_4845 8511612 68 + 22589142
UCACUUUCCUGUUAUAACUCUGUACUAAAUUGAUAUUGAGUGCUUUGGAUUCUUCUUGGUAUCAAAUU
.............................(((((((..((..............))..)))))))... (  -9.44, z-score =  -0.77, R)
>droYak2.chr2R 3937207 68 + 21139217
UCACUUUCCUGUUAUAACUCUGUUCCAAAUUGAUAUUGAGUGCUUUGGAUUCUUCUUGGUAUCAAAUU
.............................(((((((..((..............))..)))))))... (  -9.44, z-score =  -0.53, R)
>droSec1.super_1 9275131 68 - 14215200
UCACUUUCCUGUUAUAACUCUCAACUAAAUUGAUAUUGAGUGCUUUGGAUUCUUCUUGGUAUCAAAUU
.............................(((((((..((..............))..)))))))... (  -9.44, z-score =  -0.87, R)
>droSim1.chr2R 10523169 68 - 19596830
UCACUUUCCUGUUAUAACUCUCAACUAAAUUGAUAUUGAGUGCUUUGGAUUCUUCUUGGUAUCAAAUU
.............................(((((((..((..............))..)))))))... (  -9.44, z-score =  -0.87, R)
>consensus
UCACUUUCCUGUUAUAACUCUCAACUAAAUUGAUAUUGAGUGCUUUGGAUUCUUCUUGGUAUCAAAUU
.............................(((((((..((..............))..)))))))... ( -9.44 =  -9.44 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:25:53 2011