| Sequence ID | dm3.chr2R |
|---|---|
| Location | 11,777,258 – 11,777,355 |
| Length | 97 |
| Max. P | 0.802138 |
| Location | 11,777,258 – 11,777,355 |
|---|---|
| Length | 97 |
| Sequences | 5 |
| Columns | 103 |
| Reading direction | forward |
| Mean pairwise identity | 88.45 |
| Shannon entropy | 0.18949 |
| G+C content | 0.46195 |
| Mean single sequence MFE | -28.78 |
| Consensus MFE | -24.30 |
| Energy contribution | -24.02 |
| Covariance contribution | -0.28 |
| Combinations/Pair | 1.15 |
| Mean z-score | -1.75 |
| Structure conservation index | 0.84 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.74 |
| SVM RNA-class probability | 0.802138 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 11777258 97 + 21146708 ------UGUGCGUCCGGACCCGGGUCCGGCUUUAUUAUUUUAAUAGAGUGUGCUCAAUGUUUGAACAAUUGGCAAUGGGCAAUGGGCAAAUGGCGAAAGAAUG ------.....((((((((....)))).(((((((((...))))))))).((((((.((((.........)))).))))))..))))......(....).... ( -29.10, z-score = -1.23, R) >droSim1.chr2R 10519661 90 + 19596830 ------UGUGCGUCCGGACCCGGGUCCGGCUUUAUUAUUUUAAUAGAGUGUGCUCAAUGUUUGAACAAUUGGCAAUGGGCAA-------AUGGCGAAAGAAUG ------....(((((((((....)))))(((((((((...))))))))).((((((.((((.........)))).)))))).-------..))))........ ( -27.70, z-score = -1.76, R) >droSec1.super_1 9271633 90 + 14215200 ------UGUGCGUCCGGACCCGGGUCCGGCUUUAUUAUUUUAAUAGAGUGUGCUCAAUGUUUGAACAAUUGGCAAUGGGCAA-------AUGGCGAAAGAAUG ------....(((((((((....)))))(((((((((...))))))))).((((((.((((.........)))).)))))).-------..))))........ ( -27.70, z-score = -1.76, R) >droYak2.chr2R 3933660 90 - 21139217 ------UGUGCGUCCGGACCCGGGUCCAGCUUUAUUAUUUUAAUAGAGUGUGCUCAAUGUUUGAACAAUUGGCAACGGGCAA-------CUGGUAAAAGGAAG ------......(((((((....)))).(((((((((...))))))))).(((.((((((....)).))))))).(((....-------)))......))).. ( -24.70, z-score = -0.91, R) >droEre2.scaffold_4845 8508165 96 - 22589142 UGUGCGUCCGGACCCGGACCCGGGUCCGGCUUUAUUAUUUUAAUAGAGUGUGCUCAAUGUUUGAACAAUUGGCAACGGGCAA-------AUGCUGAAAGAAAG .(..(...((((((((....))))))))(((((((((...))))))))))..)(((..(((((.....(((....))).)))-------))..)))....... ( -34.70, z-score = -3.11, R) >consensus ______UGUGCGUCCGGACCCGGGUCCGGCUUUAUUAUUUUAAUAGAGUGUGCUCAAUGUUUGAACAAUUGGCAAUGGGCAA_______AUGGCGAAAGAAUG ........(((...(((((....)))))(((((((((...))))))))).((((((.((((.........)))).))))))...........)))........ (-24.30 = -24.02 + -0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:25:52 2011