| Sequence ID | dm3.chr2R |
|---|---|
| Location | 11,765,844 – 11,765,941 |
| Length | 97 |
| Max. P | 0.643119 |
| Location | 11,765,844 – 11,765,941 |
|---|---|
| Length | 97 |
| Sequences | 12 |
| Columns | 121 |
| Reading direction | forward |
| Mean pairwise identity | 79.75 |
| Shannon entropy | 0.38861 |
| G+C content | 0.35786 |
| Mean single sequence MFE | -19.92 |
| Consensus MFE | -14.76 |
| Energy contribution | -14.74 |
| Covariance contribution | -0.02 |
| Combinations/Pair | 1.21 |
| Mean z-score | -1.11 |
| Structure conservation index | 0.74 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.32 |
| SVM RNA-class probability | 0.643119 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 11765844 97 + 21146708 UCAUGUGGUGCAC---AGCACUUAAUGAAUUUCAUUGAUGCUAUUUAUUAGCUACUUAAAUGAAUUUUACAAUAAUUUGCGAGCAGACCCAGCGGACCAC--------------------- ....(((((.(.(---((((.((((((.....))))))))))........(((.(.(((((.............))))).)))).......).).)))))--------------------- ( -20.22, z-score = -1.38, R) >droSim1.chr2R 10508160 97 + 19596830 UCAUGUGGUGCAC---AGCACUUAAUGAAUUUCAUUGAUGCUAUUUAUUAGCUACUUAAAUGAAUUUUACAAUAAUUUGCGAGCAGACCCAGCGGACCAC--------------------- ....(((((.(.(---((((.((((((.....))))))))))........(((.(.(((((.............))))).)))).......).).)))))--------------------- ( -20.22, z-score = -1.38, R) >droSec1.super_1 9260138 97 + 14215200 UCAUGUGGUGCAC---AGCACUUAAUGAAUUUCAUUGAUGCUAUUUAUUAGCUACUUAAAUGAAUUUUACAAUAAUUUGCGAGCAGACCCAGCGGACCAC--------------------- ....(((((.(.(---((((.((((((.....))))))))))........(((.(.(((((.............))))).)))).......).).)))))--------------------- ( -20.22, z-score = -1.38, R) >droYak2.chr2R 3921728 96 - 21139217 UCAUGUGGUGCAC---AGCACUUAAUGAAUUUCAUUGAUGCUAUUUAUUAGCUACUUAAAUGAAUUUUACAAUAAUUUGCGAGCAG-CCCAGCGGACCAC--------------------- ....(((((.(.(---((((.((((((.....))))))))))........(((.(((...((((((.......)))))).))).))-)...).).)))))--------------------- ( -20.30, z-score = -1.05, R) >droEre2.scaffold_4845 8496658 96 - 22589142 UCAUGUGGUGCAC---AGCACUUAAUGAAUUUCAUUGAUGCUAUUUAUUAGCUACUUAAAUGAAUUUUACAAUAAUUUGCGAGCAG-CCCAGCGGACCAC--------------------- ....(((((.(.(---((((.((((((.....))))))))))........(((.(((...((((((.......)))))).))).))-)...).).)))))--------------------- ( -20.30, z-score = -1.05, R) >droAna3.scaffold_13266 7941964 92 - 19884421 CCAUGUGGUUGCC---AGCACUUAGUG-----CAUUGAUGCUAUUUAUUAGCUACUUAAAUGAAUUUUACAAUAAUUUGCGAGCAGCCCUGCCACAUCAC--------------------- ..(((((((((((---.((((...)))-----)((((..((((.....))))....((((.....)))))))).......).))).....)))))))...--------------------- ( -18.40, z-score = -0.10, R) >dp4.chr3 17824663 100 + 19779522 UCAUGUGGUGCAC---AGCACCUAAUGAAUUUCAUUGAAGCUAUUUAUUAGCUAGUUAAAUGAAUUUUAUAAUAAUUUUGCACACACACACGCACUUGACGAU------------------ ...(((((((((.---........(((((.((((((..(((((.....))))).....)))))).)))))........))))).))))...............------------------ ( -21.93, z-score = -2.28, R) >droPer1.super_73 41463 99 - 267513 UCAUGUGGUGCAC---AGCACCUAAUGAAUUUCAUUGAAGCUAUUUAUUAGCUAGUUAAAUGAAUUUUAUAAUAAUUUUGCACACACACACGCACUUGACGU------------------- ...(((((((((.---........(((((.((((((..(((((.....))))).....)))))).)))))........))))).)))).((((....).)))------------------- ( -22.13, z-score = -2.09, R) >droWil1.scaffold_180699 755591 120 + 2593675 UCAUGUGGUGUGCCUGGGCACUUAAUGAAUUUCAUUGAAGCUAUUUAUUAGCUACUUAAAUGAAUUUUACAAUAAUUUUAGAUGAACACCGACG-ACCACAACAGAAGAGCAGCAGCAGCA ...((((((((((....))))....((((.((((((..(((((.....))))).....)))))).)))).........................-))))))........((....)).... ( -26.00, z-score = -1.26, R) >droGri2.scaffold_15245 17822053 85 - 18325388 UCGUGUGGUGCAC---AGCACUUAAUGACUUUCAUUGAUGCUAUUUAUUAGCUAGUUAAAUGAAUUUUACAAUAAUUUUAGAUGAA-CC-------------------------------- ((((.((((((..---.))))....(((..((((((...((((.....))))......))))))..))).........)).)))).-..-------------------------------- ( -14.10, z-score = -0.39, R) >droMoj3.scaffold_6496 1241329 93 - 26866924 UCGUGUGGUGCAC---AGCUCCAAAUGACUUUCAUUGAUGCUAUUUAUUAGCUAGUUAAAUGAAUUUUACAAUAAUUUUAGAUGUG-GCCAA-GAACC----------------------- ((...((((.(((---(.((.....(((..((((((...((((.....))))......))))))..)))..........)).))))-)))).-))...----------------------- ( -15.46, z-score = 0.29, R) >droVir3.scaffold_12875 4443966 94 + 20611582 UCGUGUGGUGCAC---AGCACUUAAUGACUUUCAUUGAUGCUAUUUAUUAGCUAGUUAAAUGAAUUUUACAAUAAUUUUAGAUGCG-GCAAACGAACC----------------------- ((((.((.(((((---((((.((((((.....))))))))))(((((((.........)))))))...............).))))-.)).))))...----------------------- ( -19.80, z-score = -1.26, R) >consensus UCAUGUGGUGCAC___AGCACUUAAUGAAUUUCAUUGAUGCUAUUUAUUAGCUACUUAAAUGAAUUUUACAAUAAUUUGCGAGCAG_CCCAGCGGACCAC_____________________ ((((..(((((......)))))..))))..((((((...((((.....))))......))))))......................................................... (-14.76 = -14.74 + -0.02)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:25:51 2011