Locus 4262

Sequence ID dm3.chr2R
Location 11,738,815 – 11,738,904
Length 89
Max. P 0.895364
window5841

overview

Window 1

Location 11,738,815 – 11,738,904
Length 89
Sequences 4
Columns 89
Reading direction reverse
Mean pairwise identity 94.76
Shannon entropy 0.08416
G+C content 0.52394
Mean single sequence MFE -28.05
Consensus MFE -25.81
Energy contribution -25.88
Covariance contribution 0.06
Combinations/Pair 1.04
Mean z-score -1.88
Structure conservation index 0.92
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 1.12
SVM RNA-class probability 0.895364
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr2R 11738815 89 - 21146708
AGGGGGCUGGCCGGAUGGGCGGUUAGAAGGCUGAAUGUUGGGUGGUAUGAGGUCAGAGAACGCAACGACAUUUUAUCUGGCCAUGUAAA
.....(((((((((((((((((((....)))))..(((((.((....((....))....)).)))))....)))))))))))).))... ( -29.00, z-score =  -2.32, R)
>droEre2.scaffold_4845 8468268 88 + 22589142
AGGGUGAUGGCCGAAUGGGCGGUU-GAUGGCUGGAUGUUGGGUGGUAUGAGGUCAGAGAACGCAGCGACAUUUUAUCUGGCCAUGUAAA
.....(((.(((.....))).)))-.(((((..(((((((.((....((....))....)).))))........)))..)))))..... ( -26.00, z-score =  -1.19, R)
>droSec1.super_1 9233045 89 - 14215200
AGGGUGCUGGCCGGAUGGGCGGUUAGAAGGCUGAAAGUUGGGUGGUAUGAGGUCAGAGAACGCAACGACAUUUUAUCUGGCCAUGUAAA
....((((((((((((((((((((....)))))...((((.((....((....))....)).)))).....)))))))))))).))).. ( -29.80, z-score =  -2.67, R)
>droSim1.chr2R 10478326 89 - 19596830
AGGGUGCCGGCCGGAUGGGCGGUUAGAAGGCUGAAAGUUGGGUGGUAUGAGGUCAGAGAACGCAACGACAUUUUAUCUGGCCAUGUAAA
........((((((((((((((((....)))))...((((.((....((....))....)).)))).....)))))))))))....... ( -27.40, z-score =  -1.36, R)
>consensus
AGGGUGCUGGCCGGAUGGGCGGUUAGAAGGCUGAAAGUUGGGUGGUAUGAGGUCAGAGAACGCAACGACAUUUUAUCUGGCCAUGUAAA
........((((((((((((((((....)))))...((((.((....((....))....)).)))).....)))))))))))....... (-25.81 = -25.88 +   0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:25:47 2011