| Sequence ID | dm3.chr2R |
|---|---|
| Location | 11,736,402 – 11,736,495 |
| Length | 93 |
| Max. P | 0.880699 |
| Location | 11,736,402 – 11,736,495 |
|---|---|
| Length | 93 |
| Sequences | 8 |
| Columns | 110 |
| Reading direction | forward |
| Mean pairwise identity | 57.39 |
| Shannon entropy | 0.78444 |
| G+C content | 0.56717 |
| Mean single sequence MFE | -29.40 |
| Consensus MFE | -13.09 |
| Energy contribution | -13.34 |
| Covariance contribution | 0.25 |
| Combinations/Pair | 1.43 |
| Mean z-score | -0.82 |
| Structure conservation index | 0.45 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.05 |
| SVM RNA-class probability | 0.880699 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 11736402 93 + 21146708 UGCGGGGGAUGAGCGCGUUUGUUUU---UGGUCAGGUGUGCGAUCCCGUAACGAGUGAACAGGAGCUGC-----AAGGCA-----GCAGGCUGGGAUAAAAGCUCC---- (((((((.....(((((..((....---....))..)))))..)))))))...........((((((.(-----..(((.-----....)))..).....))))))---- ( -32.20, z-score = -1.09, R) >droSim1.chr2R 10475976 93 + 19596830 UGCGGGGGAUGAGCGCGUUUGUUUU---UGGUCAGGUGUGCGAUCCCGAAACGAGUGAAAAGGAGCUGC-----AAGGCA-----GCAGGCUGGGAUAAAAGCUCC---- .....(((((..(((((..((....---....))..))))).)))))..............((((((.(-----..(((.-----....)))..).....))))))---- ( -30.30, z-score = -0.76, R) >droSec1.super_1 9230652 93 + 14215200 UGCGGGGGAUGAGCGCGUUUGUUUU---UGGUCAGGUGUGCGAUCCCGAAACGAGUGAAAAGGAGCUGC-----AAGGCA-----GCAGGCUGGGAUAAAAGCUCC---- .....(((((..(((((..((....---....))..))))).)))))..............((((((.(-----..(((.-----....)))..).....))))))---- ( -30.30, z-score = -0.76, R) >droYak2.chr2R 3890710 108 - 21139217 UGCGGGGGAUGAGCGCGUUUGUUUUG--CGGACAGGUGUGCGAUCCCGAAACGAGUGAAAAGGAGUUGCUGGAAAAGGGAUAAAAGCAGCAAGGGAUUAAAGCUCCAGCC .((.((((....(((((..((((...--..))))..)))))((((((........(....)...((((((..............))))))..))))))....)))).)). ( -33.84, z-score = -1.71, R) >droEre2.scaffold_4845 8465962 106 - 22589142 UGCGGGGGAUGAGCGCGUUUGUUUU---CGGGCAGGUGUGCGAUCCCGAAGCGAUUGAGUAGCUGAAAGGAGUAGCUGCUGGGCAGCAGCCAGGGAU-AACGCUGCAUCC (((..(((((..(((((..((((..---..))))..))))).)))))..((((....((((((((.......)))))))).(((....)))......-..)))))))... ( -41.70, z-score = -1.52, R) >droAna3.scaffold_13266 7425292 82 - 19884421 AGCGUGGGAUGAAAGCGCUUGUUUUCUUCAGGCGGACGUGCGUUGCCGAGAAACAAAAACAAGAGGAGAACCUGAAUCGGGC---------------------------- .((.(((..........((((((((.(((.((((.((....))))))..)))...))))))))(((....)))...))).))---------------------------- ( -18.70, z-score = 1.20, R) >dp4.chr3 329236 74 - 19779522 --UGAGGGAUGAGCGGCCUUGUUUA---UAGGCAGGUGCGCGUCCCCGUGACAGUAGCAGCAGCGGAAGCAACAGAGGC------------------------------- --.(.((((((.(((.(((.(((..---..))))))))).)))))))...............((....)).........------------------------------- ( -23.20, z-score = -0.26, R) >droPer1.super_37 308200 74 - 760358 --UGAGGGAUGAGCGGACUUGUUUA---UAGGCAGGUGCGCGUCCCCGUGACAGUAGCAGCAGCGGAAGCAACAGAGGC------------------------------- --.(.(((((..(((.(((((((..---..))))))).)))))))))...............((....)).........------------------------------- ( -25.00, z-score = -1.64, R) >consensus UGCGGGGGAUGAGCGCGUUUGUUUU___UGGGCAGGUGUGCGAUCCCGAAACGAGUGAAAAGGAGCAGC____AAAGGCA_____GCAG_C_GGGAU_AAAGCUCC____ .....((((...(((((((((..(.....)..)))))))))..))))............................................................... (-13.09 = -13.34 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:25:45 2011