| Sequence ID | dm3.chr2L |
|---|---|
| Location | 2,994,367 – 2,994,441 |
| Length | 74 |
| Max. P | 0.883304 |
| Location | 2,994,367 – 2,994,441 |
|---|---|
| Length | 74 |
| Sequences | 7 |
| Columns | 78 |
| Reading direction | reverse |
| Mean pairwise identity | 72.41 |
| Shannon entropy | 0.55647 |
| G+C content | 0.43947 |
| Mean single sequence MFE | -19.89 |
| Consensus MFE | -11.98 |
| Energy contribution | -13.19 |
| Covariance contribution | 1.21 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.11 |
| Structure conservation index | 0.60 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.06 |
| SVM RNA-class probability | 0.883304 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 2994367 74 - 23011544 AUGAAU----UGGAAUGUUUAAAAGUUAUGAGCUUACUUGGUAGUGGUUCCGCUUUUGGGUGGCGCCACGUUGCCAUU .(((((----......))))).((((.....))))...((((((((((.(((((....))))).)))))..))))).. ( -20.80, z-score = -1.40, R) >droSim1.chr2L 2952366 70 - 22036055 AUGAAU----UGGAAUGUUUAAAAUUUA----CUUACUUGGUAGGGGUUCCGCUUUUGGGUGGCGCCACGUUGCCAUU ......----((((((((......((((----((.....))))))(((.(((((....))))).)))))))).))).. ( -18.70, z-score = -1.06, R) >droSec1.super_5 1150145 70 - 5866729 AUGAAU----CGGAAUGUUUAAAAGUUA----CUUACUUGGUAGUGGUUCCGCUUUUGGGUGGCGCCACGUUGCCAUU ......----............((((..----...))))(((((((((.(((((....))))).)))))..))))... ( -19.40, z-score = -1.24, R) >droYak2.chr2L 2987724 75 - 22324452 AUGUAU---AUGAAAUGCUUAAAAAUUAUGAGCUCACUUGGUGGUGGUGCCGCUUUUGGGUGGCGCCACGUUGCCAUU ......---.......(((((.......))))).....((((.(((((((((((....)))))))))))...)))).. ( -27.40, z-score = -2.86, R) >droEre2.scaffold_4929 3039898 78 - 26641161 AUGUACUAUAUGGAAUGUUUAAAAGUUAUGAGCUCACUUGGUAGUAGUUCCGCUCUUGGGUGGCGCCACGUUGCCAUU ...(((((..(((...(((((.......))))))))..)))))((.((.(((((....))))).)).))......... ( -15.20, z-score = 1.09, R) >droWil1.scaffold_180703 1169421 73 + 3946847 ----AUAAACUAGAAAAUACUUCAGUUA-ACACUCACUUGGUGGUGGUGCCACUUUUUGGCGGUGGCACAUUACCAUU ----...((((.(((.....))))))).-.........((((((((.(((((((.......))))))))))))))).. ( -22.90, z-score = -3.13, R) >droMoj3.scaffold_6500 26573838 72 + 32352404 ----CUAGCUUUCGCUGAUUAAAAGAUC--GACUCACUUGGUUGUUGUUCCACUUUUGGGGGCAGGCAAGCUUCCGUU ----..(((((..(((...........(--((((.....))))).((((((.(....)))))))))))))))...... ( -14.80, z-score = 0.84, R) >consensus AUGAAU____UGGAAUGUUUAAAAGUUA__AGCUCACUUGGUAGUGGUUCCGCUUUUGGGUGGCGCCACGUUGCCAUU ......................................((((.(((((.(((((....))))).)))))...)))).. (-11.98 = -13.19 + 1.21)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:12:43 2011