| Sequence ID | dm3.chr2R |
|---|---|
| Location | 11,733,827 – 11,733,942 |
| Length | 115 |
| Max. P | 0.524227 |
| Location | 11,733,827 – 11,733,942 |
|---|---|
| Length | 115 |
| Sequences | 6 |
| Columns | 115 |
| Reading direction | reverse |
| Mean pairwise identity | 77.16 |
| Shannon entropy | 0.44951 |
| G+C content | 0.36589 |
| Mean single sequence MFE | -25.65 |
| Consensus MFE | -13.60 |
| Energy contribution | -16.23 |
| Covariance contribution | 2.63 |
| Combinations/Pair | 1.22 |
| Mean z-score | -1.42 |
| Structure conservation index | 0.53 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.06 |
| SVM RNA-class probability | 0.524227 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 11733827 115 - 21146708 UGUAAAAAUUAAGCUUUAUGCAAAAGACAAGCAACGAAUGAGUAAUCAAAAAUGAUGAAUUGUUUGUUUGCCUUUCCCGCAACUACGGCAUUUCGAGGCAAAUUUGCAUUAGCCU ............(((..(((((((.........(((((..(...((((....))))...)..)))))(((((((..(((......)))......))))))).))))))).))).. ( -27.60, z-score = -1.81, R) >droAna3.scaffold_13266 7422825 99 + 19884421 AACAAAACCUAAUCUCUAU-CAAGAGAAA---AACAAAUAGCAGGGCAGUGAUUUUCAG--GUUCUGUGACAGGUAUUAUGGCUAAGCGAGUUUACUGAAGGGCC---------- ......((((..(((((..-..)))))..---........(((((((..((.....)).--)))))))...)))).....((((...(.((....)))...))))---------- ( -22.20, z-score = -0.70, R) >droEre2.scaffold_4845 8463418 115 + 22589142 UGUAAAAACUAAGCUUUAUGCAAAAGACAAGCAACGAAUGAGUAAUCAAAAAUAAUUAAUGGUUUGUUUGCUUUUUCCCCGUCUACGGCAUUUCGAGGCAAAUUUGCAUUAGCCU ............(((..(((((((....(((((((((((.(.((((........)))).).))))).)))))).......((((.(((....)))))))...))))))).))).. ( -24.80, z-score = -1.21, R) >droYak2.chr2R 3887926 115 + 21139217 UGUAAAAACUAAGCUUUAUGCAAAAGACAAGCAACGAAUGAGUAAUCAAAAAUGAUGAAUUGUUUGUUUACUUUUCCCGGGACUACGGCACUUAGAGGCAAAUUUGCAUUAGCCU ............(((..((((((((((((((((((......)).((((....))))....))))))))).((((..(((......))).....)))).....))))))).))).. ( -24.10, z-score = -1.00, R) >droSec1.super_1 9228067 115 - 14215200 UGUAAAAACUAAGCUUUAUGCAAAAGACAAGCAACGAAUGAGUAAUCAAAAAUGAUGAAUUGUUUGUUUGCCUUUCCCGCAACUACGGCAUUUCGAGGCAAAUUUGCAUUAGCCU ............(((..(((((((.........(((((..(...((((....))))...)..)))))(((((((..(((......)))......))))))).))))))).))).. ( -27.60, z-score = -1.88, R) >droSim1.chr2R 10473382 115 - 19596830 UGUAAAAACUAAGCUUUAUGCAAAAGACAAGCAACGAAUGAGUAAUCAAAAAUGAUGAAUUGUUUGUUUGCCUUUCCCGCAACUACGGCAUUUCGAGGCAAAUUUGCAUUAGCCU ............(((..(((((((.........(((((..(...((((....))))...)..)))))(((((((..(((......)))......))))))).))))))).))).. ( -27.60, z-score = -1.88, R) >consensus UGUAAAAACUAAGCUUUAUGCAAAAGACAAGCAACGAAUGAGUAAUCAAAAAUGAUGAAUUGUUUGUUUGCCUUUCCCGCAACUACGGCAUUUCGAGGCAAAUUUGCAUUAGCCU ............(((..(((((((.........((((((((...((((....))))...))))))))(((((((..(((......)))......))))))).))))))).))).. (-13.60 = -16.23 + 2.63)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:25:44 2011