| Sequence ID | dm3.chr2R |
|---|---|
| Location | 11,729,902 – 11,729,992 |
| Length | 90 |
| Max. P | 0.956963 |
| Location | 11,729,902 – 11,729,992 |
|---|---|
| Length | 90 |
| Sequences | 8 |
| Columns | 109 |
| Reading direction | reverse |
| Mean pairwise identity | 79.43 |
| Shannon entropy | 0.37456 |
| G+C content | 0.50899 |
| Mean single sequence MFE | -30.16 |
| Consensus MFE | -15.83 |
| Energy contribution | -17.23 |
| Covariance contribution | 1.41 |
| Combinations/Pair | 1.09 |
| Mean z-score | -2.65 |
| Structure conservation index | 0.52 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.64 |
| SVM RNA-class probability | 0.956963 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 11729902 90 - 21146708 GCCAUGUCAGAAG-CGGAGCA-GCCGAAAAACGCACAAAUUGUUUUGGGGCGAUUAAGUCAACA--AGACGGCGCUAACAUGGACAUGG-ACAUG-------------- .(((((((.....-...(((.-(((......(((.((((....))))..))).....(((....--.)))))))))......)))))))-.....-------------- ( -29.14, z-score = -3.13, R) >droSim1.chr2R 10469566 90 - 19596830 GCCAUGUCAGAAG-CGGAGCA-GCCGAAAAACGCACAAAUUGUUUUGGGGCGAUUAAGUCAACA--AGACGGCGCUAACAUGGACAUGG-ACAUG-------------- .(((((((.....-...(((.-(((......(((.((((....))))..))).....(((....--.)))))))))......)))))))-.....-------------- ( -29.14, z-score = -3.13, R) >droSec1.super_1 9224036 90 - 14215200 GCCAUGUCAGAAG-CGGAGCA-GCCGAAAAACGCACAAAUUGUUUUGGGGCGAUUAAGUCAACA--AGACGGCGCUAACAUGGACAUGG-ACAUG-------------- .(((((((.....-...(((.-(((......(((.((((....))))..))).....(((....--.)))))))))......)))))))-.....-------------- ( -29.14, z-score = -3.13, R) >droYak2.chr2R 3884007 91 + 21139217 GCCAUGUCAGAAG-CGGAGCA-GCCGAAAAACGCACAAAUUGUUUUGGGGCGAUUAAGUCAACA--AGACGGCGCUAACAUGGACAUGGAACAUG-------------- .(((((((.....-...(((.-(((......(((.((((....))))..))).....(((....--.)))))))))......)))))))......-------------- ( -29.14, z-score = -3.12, R) >droEre2.scaffold_4845 8459443 87 + 22589142 GCCAUGUCAGAAG-CGGAGCA-GCCGAAAAACGCACAAAUUGUUUUGGGGCGAUUAAGUCAACA--AGACGGCGCUAACGUGGACAUGAAA------------------ ..((((((....(-((.(((.-(((......(((.((((....))))..))).....(((....--.)))))))))..))).))))))...------------------ ( -28.90, z-score = -2.79, R) >droAna3.scaffold_13266 7417629 99 + 19884421 GCCAUGUCAAGAG-CGGCGCAGGCCGAAAAUCGGGCAAGUUGUUUC-GGGCGAUUAAGUCAACAAGAGACGGCGCUAACGUGG-UAUGGUACAUGCCACAUG------- (((.((((..(((-((((...(.(((.....))).)..))))))).-.)))).....(((.......))))))......((((-((((...))))))))...------- ( -35.80, z-score = -2.26, R) >dp4.chr3 322743 106 + 19779522 GCAAUGUCCAGAGUCAGAGCA-UCCGAAGCAAGAGUAAAUUGUUUUGGGGCGAUUAAGUCAACA--AGACGGCGCUAACAUGCACCACGGACCAGAUCCAGGGACCACG .....((((...(((...((.-((((((((((.......))))))))))))(((...)))....--.)))((.((......)).))..(((.....)))..)))).... ( -30.00, z-score = -1.84, R) >droPer1.super_37 301736 106 + 760358 GCAAUGUCCAGAGUCAGAGCA-UCCGAAGCAAGAGUAAAUUGUUUUGGGGCGAUUAAGUCAACA--AGACGGCGCUAACAUGCACCACGGACCAGAUCCAGGGACCACG .....((((...(((...((.-((((((((((.......))))))))))))(((...)))....--.)))((.((......)).))..(((.....)))..)))).... ( -30.00, z-score = -1.84, R) >consensus GCCAUGUCAGAAG_CGGAGCA_GCCGAAAAACGCACAAAUUGUUUUGGGGCGAUUAAGUCAACA__AGACGGCGCUAACAUGGACAUGG_ACAUG______________ .(((((((.........(((..(((............(((((((....)))))))..(((.......)))))))))......))))))).................... (-15.83 = -17.23 + 1.41)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:25:43 2011