| Sequence ID | dm3.chr2R |
|---|---|
| Location | 11,723,470 – 11,723,561 |
| Length | 91 |
| Max. P | 0.938908 |
| Location | 11,723,470 – 11,723,561 |
|---|---|
| Length | 91 |
| Sequences | 6 |
| Columns | 100 |
| Reading direction | reverse |
| Mean pairwise identity | 82.40 |
| Shannon entropy | 0.30358 |
| G+C content | 0.66409 |
| Mean single sequence MFE | -42.23 |
| Consensus MFE | -26.58 |
| Energy contribution | -28.89 |
| Covariance contribution | 2.31 |
| Combinations/Pair | 1.08 |
| Mean z-score | -2.48 |
| Structure conservation index | 0.63 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.43 |
| SVM RNA-class probability | 0.938908 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 11723470 91 - 21146708 UGCG-UGCUG--CGUUGCCUCCGCCGAUUGGCCGGAACGCGGCU------GCAACGGCAACGCAUCGGCUGCGGAAACGGCCACGGAUAAGGCUACGCUC ....-....(--(((.((((...(((..((((((...(((((((------(...((....))...))))))))....)))))))))...)))).)))).. ( -47.60, z-score = -3.22, R) >droPer1.super_37 295567 76 + 760358 UGCGACUCUGCUCUCUGCCUCUGCCGAUUGGCCGGAACGCGGCU------GCAACGGCAA-----------CGGCAACGGCUACGGCUACGCU------- .(((...........((((..(((((..((((((.....)))))------)...))))).-----------.))))..(((....))).))).------- ( -30.90, z-score = -2.19, R) >droAna3.scaffold_13266 7412006 79 + 19884421 UUCG-UGCUG--CGUUGCCUCCGCCGAUUGGCCGGAACGCGGCU------GCAACGGCAA-----------CGGCAACGGAUACGGAUAAGGCCACGCU- ....-....(--(((.((((((((((..((((((.....)))))------)...))))..-----------((....)).....)))...))).)))).- ( -32.50, z-score = -0.85, R) >droEre2.scaffold_4845 8452981 97 + 22589142 UGCG-UGCUG--CGUUGCCUCCGCCGAUUGGCCGGAACGCGGCUGCAACGGCAACGGCAACGCAUCGGCUGCGGAAACGGCCACGGAUAAGGCUACGCUC .(((-(((((--(((((((...((((..((((((.....))))))...))))...))))))))...(((..((....)))))........))).)))).. ( -47.20, z-score = -2.20, R) >droSec1.super_1 9217602 91 - 14215200 UGCG-UGCUG--CGUUGCCUCCGCCGAUUGGCCGGAACGCGGCU------GCAACGGCAACGCAUCGGCUGCGGAAACGGCCACGGAUAAGGCUACGCUC ....-....(--(((.((((...(((..((((((...(((((((------(...((....))...))))))))....)))))))))...)))).)))).. ( -47.60, z-score = -3.22, R) >droSim1.chr2R 10463125 91 - 19596830 UGCG-UGCUG--CGUUGCCUCCGCCGAUUGGCCGGAACGCGGCU------GCAACGGCAACGCAUCGGCUGCGGAAACGGCCACGGAUAAGGCUACGCUC ....-....(--(((.((((...(((..((((((...(((((((------(...((....))...))))))))....)))))))))...)))).)))).. ( -47.60, z-score = -3.22, R) >consensus UGCG_UGCUG__CGUUGCCUCCGCCGAUUGGCCGGAACGCGGCU______GCAACGGCAACGCAUCGGCUGCGGAAACGGCCACGGAUAAGGCUACGCUC ............(((.((((...(((..((((((...(((((((......((....))........)))))))....)))))))))...)))).)))... (-26.58 = -28.89 + 2.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:25:38 2011