| Sequence ID | dm3.chr2R |
|---|---|
| Location | 11,721,661 – 11,721,768 |
| Length | 107 |
| Max. P | 0.670452 |
| Location | 11,721,661 – 11,721,768 |
|---|---|
| Length | 107 |
| Sequences | 5 |
| Columns | 123 |
| Reading direction | reverse |
| Mean pairwise identity | 78.17 |
| Shannon entropy | 0.36625 |
| G+C content | 0.41172 |
| Mean single sequence MFE | -27.56 |
| Consensus MFE | -19.20 |
| Energy contribution | -21.24 |
| Covariance contribution | 2.04 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.38 |
| Structure conservation index | 0.70 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.39 |
| SVM RNA-class probability | 0.670452 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 11721661 107 - 21146708 CGCCAGAUGUGCUAUCUCGUUUUCUACUCGAGACCAGAUAAGCUUAAUUGAACUUGGUGAAAAGUGCACACAUUGCAUUUUGAGUGCAGACACAUUCUAAUCCGUAA---------------- ((((((((..(((((((.(((((......))))).)))).)))...))).....))))).((((((((.....))))))))(((((......)))))..........---------------- ( -24.10, z-score = -0.59, R) >droEre2.scaffold_4845 8451197 118 + 22589142 CGGCAGAUGUGUUAUCUGGUUUUAUACUCGCAACCAGAUAAGCUAAAUAGA-----GUGAAAAGUGCACAAAUUGCAUUUAGAGUGCAGACAUAUUCUAGGCCGUAAUAUUUCCGAAACUGAG (((.((((((.((((((((((..........))))))))))(((...((((-----(((..(((((((.....)))))))...((....)).))))))))))....)))))))))........ ( -29.00, z-score = -1.59, R) >droYak2.chr2R 3875357 113 + 21139217 CGCCAGAUGCGUUAUCUGGUUUUAUACACGCGACGCGAUAAGCUAAAUUGAACUUUGUGAAAAGUGCACACAUUGCACUUAGAGUGCAGACAUAUUC----------UAUUUCCUAAAGUGAG .((((((((...))))))))........(((...)))..............((((((.((((((((((.....))))))(((((((......)))))----------)))))).))))))... ( -26.80, z-score = -0.89, R) >droSec1.super_1 9215894 107 - 14215200 CGCCAGAUGUGCUAUCUGGUUUUCUACUCGAGACCAGAUAAGCUUAAUUGAACUUGGUGAAAAGUGCACACAUUGCAUUUUGAGUGCAGACACAUUCGAAUCCGUAA---------------- ((((((((..(((((((((((((......)))))))))).)))...))).....))))).((((((((.....))))))))(((((......)))))..........---------------- ( -31.10, z-score = -2.36, R) >droSim1.chr2R 10461291 107 - 19596830 CGCCAGAUGUGCUAUCUGGUUUUCUACUCGAUCCCAGAUAAGCUUAAUUGAACUUGGUGAAAAGUGCACACAUUGCAUUUUGAGUGCAGACCCAUUCGAAUCCGUAA---------------- ((((((((..(((((((((..((......))..)))))).)))...))).....))))).((((((((.....))))))))(((((......)))))..........---------------- ( -26.80, z-score = -1.47, R) >consensus CGCCAGAUGUGCUAUCUGGUUUUCUACUCGAGACCAGAUAAGCUUAAUUGAACUUGGUGAAAAGUGCACACAUUGCAUUUUGAGUGCAGACACAUUCGAAUCCGUAA________________ ((((((((..(((((((((((((......)))))))))).)))...))).....))))).((((((((.....))))))))(((((......))))).......................... (-19.20 = -21.24 + 2.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:25:37 2011