| Sequence ID | dm3.chr2R |
|---|---|
| Location | 11,715,335 – 11,715,386 |
| Length | 51 |
| Max. P | 0.796073 |
| Location | 11,715,335 – 11,715,386 |
|---|---|
| Length | 51 |
| Sequences | 3 |
| Columns | 51 |
| Reading direction | reverse |
| Mean pairwise identity | 96.08 |
| Shannon entropy | 0.05402 |
| G+C content | 0.70588 |
| Mean single sequence MFE | -26.30 |
| Consensus MFE | -25.99 |
| Energy contribution | -25.77 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.21 |
| Structure conservation index | 0.99 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.72 |
| SVM RNA-class probability | 0.796073 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 11715335 51 - 21146708 CAGCAGAAUGCCGCAGCUGCUGCAGCGGCGGCAGCGGCAGCGGCUCAUCAG .....((..(((((.((((((((.......)))))))).)))))...)).. ( -26.80, z-score = -1.79, R) >droSec1.super_1 9209524 51 - 14215200 CAGCAGAAUGCCGCAGCUGCUGCAGCUGCGGCGGCGGCAGCGGCUCAUCAG .....((..(((((.((((((((.......)))))))).)))))...)).. ( -26.10, z-score = -0.99, R) >droSim1.chr2R 10455098 51 - 19596830 CAGCAGAAUGCCGCAGCUGCUGCAGCUGCGGCAGCGGCAGCGGCUCACCAG .........(((((.((((((((.......)))))))).)))))....... ( -26.00, z-score = -0.86, R) >consensus CAGCAGAAUGCCGCAGCUGCUGCAGCUGCGGCAGCGGCAGCGGCUCAUCAG .........(((((.((((((((.......)))))))).)))))....... (-25.99 = -25.77 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:25:35 2011