| Sequence ID | dm3.chr2R |
|---|---|
| Location | 11,691,815 – 11,691,925 |
| Length | 110 |
| Max. P | 0.864107 |
| Location | 11,691,815 – 11,691,925 |
|---|---|
| Length | 110 |
| Sequences | 5 |
| Columns | 115 |
| Reading direction | forward |
| Mean pairwise identity | 84.43 |
| Shannon entropy | 0.26784 |
| G+C content | 0.56268 |
| Mean single sequence MFE | -19.03 |
| Consensus MFE | -18.36 |
| Energy contribution | -18.20 |
| Covariance contribution | -0.16 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.10 |
| Structure conservation index | 0.96 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.97 |
| SVM RNA-class probability | 0.864107 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 11691815 110 + 21146708 UAAGUGUGGCUUACACGGGUUCCCAUCUUUCUGUGCGUCCGUACUCAACUACCCC-CAUCUCCCCAACCAUGCC---CUUUCGUCCUGUCCUACUACUCCAUGUCCUGUCGCAC- ...(((((((..(((.((....))........((((....))))...........-..................---........................)))...)))))))- ( -16.00, z-score = -0.09, R) >droSim1.chr2R 10429195 111 + 19596830 UAAGUGUGGCUUACACGGGUUCCCAUCUUGCUGUGCGUCCGUACUCAACUACCCC-CAUCUCCCCCAAUAUGCCGCCCUUUCGUCCUGUCCUACU---CCAUGUCCUGCCGCACU ..((((((((..(((.((((...(((.(((..((((....))))...........-.........))).)))..))))....((........)).---...)))...)))))))) ( -21.15, z-score = -1.34, R) >droSec1.super_1 9185546 108 + 14215200 UAAGUGUGGCUUACACGGGUUCCCAUCUUGCUGUGCGUCCGUACUCAACUACCCC-CAUCUCCCCCACCAUGCU---CUUUUAUCCUGUCCUACU---CCAUGUCCUGCCGCACU ..((((((((......((((.......(((..((((....)))).)))..)))).-............((((..---..................---.))))....)))))))) ( -20.90, z-score = -1.84, R) >droYak2.chr2R 3844683 100 - 21139217 UAAGUGUGGCUUACACGGCUUCCCAUCUUUCUGUGCGUCCGUACUCAACUACCCC---ACUGCCCCACUCCACU-----CUCCCCCUAUGCUGC------AUGUCCUGCCGCAC- ..((((.(((......((....))........((((....))))...........---...))).)))).....-----.........(((.((------(.....))).))).- ( -18.40, z-score = -1.28, R) >droEre2.scaffold_4845 8418210 108 - 22589142 UAAGUGUGGCUUACACGGGUUCCCAUCUUUCUGUGCGUCCGUACUCUACUACCCCACCUCUCUCCACCUCUGCC---GCUUCGUCCUGUCCUACU---CCAUGUCCUGCCGCAC- ...(((((((..(((.((....))........((((....))))..............................---..................---...)))...)))))))- ( -18.70, z-score = -0.95, R) >consensus UAAGUGUGGCUUACACGGGUUCCCAUCUUUCUGUGCGUCCGUACUCAACUACCCC_CAUCUCCCCCACUAUGCC___CUUUCGUCCUGUCCUACU___CCAUGUCCUGCCGCAC_ ...(((((((..(((.((....))........((((....)))).........................................................)))...))))))). (-18.36 = -18.20 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:25:35 2011