| Sequence ID | dm3.chr2R |
|---|---|
| Location | 11,682,024 – 11,682,134 |
| Length | 110 |
| Max. P | 0.500000 |
| Location | 11,682,024 – 11,682,134 |
|---|---|
| Length | 110 |
| Sequences | 6 |
| Columns | 111 |
| Reading direction | reverse |
| Mean pairwise identity | 81.09 |
| Shannon entropy | 0.36633 |
| G+C content | 0.42654 |
| Mean single sequence MFE | -23.53 |
| Consensus MFE | -10.94 |
| Energy contribution | -10.50 |
| Covariance contribution | -0.44 |
| Combinations/Pair | 1.25 |
| Mean z-score | -2.11 |
| Structure conservation index | 0.46 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | -0.00 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>dm3.chr2R 11682024 110 - 21146708 ACUUUUCCCCCAGC-AUCGAUUGCCACGUGAUGCCUGCUCCCCCCAUCGAUAAAUAAUCGAUGACUUGACUAAUUAGUGCAAUUUUCACGUUUCAUGUUCGCAAAUAUUCA ..............-..(((.((..((((((....(((......(((((((.....))))))).....(((....))))))....))))))..))...))).......... ( -20.80, z-score = -2.26, R) >droSim1.chr2R 10419168 110 - 19596830 ACUUUUCCACCAGC-AUCGAUUGCCACGCGAUGCAUGCUCCCCCCAUCGAUAAAUAAUCGAUGACUUGACUAAUUAGUGCAAUUUUCACGUUUCAUGUUCGCAAAUAUUCA ............((-(.....)))...((((.(((((.......(((((((.....)))))))..((((((....))).)))...........)))))))))......... ( -21.50, z-score = -1.83, R) >droSec1.super_1 9175627 110 - 14215200 ACUUUUUCACCAGC-AUCGAUUGCCACGCGAUGCCUGCUCCCCCCAUCGAUAAAUAAUCGAUGACUUGACUAAUUAGUGCAAUUUUCACGUUUCAUGUUCGCAAAUAUUCA ............((-((((.........)))))).(((......(((((((.....)))))))..((((((....))).)))..................)))........ ( -18.90, z-score = -1.08, R) >droYak2.chr2R 3834589 110 + 21139217 ACUUUUCCACCAGC-AUCGAUUGCCACGCGAUGCCUGCUCACCCCAUCGAUAAAUAAUCGAUGACUUGACUAAUUAGUGCAAUUUUCGCGUUUCAUGUUGGCAAAUAUUCA .........(((((-((.((.....((((((....(((......(((((((.....))))))).....(((....))))))....)))))).))))))))).......... ( -28.10, z-score = -3.03, R) >droEre2.scaffold_4845 8408330 110 + 22589142 ACUUUUCCACCAGC-AUCGAUUGCCCUGCGAUGCCUGCUCACCCCAUCGAUAAAUAAUCGAUGGCUUGACUAAUUAGUGCAAUUCUCGCGUUUCAUGUUGGCAAAUAUUCC .........(((((-((.((..((...((((((((((.(((..((((((((.....))))))))..))).....))).)))....)))))).))))))))).......... ( -28.80, z-score = -2.91, R) >droAna3.scaffold_13266 7364137 87 + 19884421 UCUUUUAUGAAAACUAUCGAUUGCCAUGUUCUG-----------CAGCGAUAACUAUUCGA--AAUCGAGUGAUGGGGG-----UUCCCCUUU----UUGGGAAACCUU-- ..............(((((.((((........)-----------))))))))..((((((.--...))))))...((((-----((.(((...----..))).))))))-- ( -23.10, z-score = -1.56, R) >consensus ACUUUUCCACCAGC_AUCGAUUGCCACGCGAUGCCUGCUCCCCCCAUCGAUAAAUAAUCGAUGACUUGACUAAUUAGUGCAAUUUUCACGUUUCAUGUUCGCAAAUAUUCA ...............((((((((.....(((((...........))))).....))))))))..............(((.......)))...................... (-10.94 = -10.50 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:25:32 2011