| Sequence ID | dm3.chr2R |
|---|---|
| Location | 11,675,803 – 11,675,911 |
| Length | 108 |
| Max. P | 0.776849 |
| Location | 11,675,803 – 11,675,911 |
|---|---|
| Length | 108 |
| Sequences | 7 |
| Columns | 116 |
| Reading direction | forward |
| Mean pairwise identity | 71.73 |
| Shannon entropy | 0.56038 |
| G+C content | 0.58362 |
| Mean single sequence MFE | -39.99 |
| Consensus MFE | -19.91 |
| Energy contribution | -22.57 |
| Covariance contribution | 2.66 |
| Combinations/Pair | 1.28 |
| Mean z-score | -1.28 |
| Structure conservation index | 0.50 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.66 |
| SVM RNA-class probability | 0.776849 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 11675803 108 + 21146708 CCGCGCAUUUUGCGGCAGCCAGCUCCCGGCUAAUGAAUGUUGGCCAAACGGCGGAGGAAUUCCCAUGUGGAGC--ACUCACUGCCGGCGGCCGGAAUCCAAUUCCGUUUC------ ((((((.....))(((((...(((((.(((((((....))))))).....(((..((....))..))))))))--.....))))).)))).((((((...))))))....------ ( -42.80, z-score = -1.30, R) >droSim1.chr2R 10412950 108 + 19596830 CCGCGCAUUUUGCGGCAGCCAGCACCCGGCUAAUGAAUGUUGGCCAAACGGCGGAGGAAUUCCCAUGUGGAGC--ACUCACUGCCGGCGGCCGGAAUCCAAUUCCGUUUC------ (((((.....)))))..(((.((....(((((((....)))))))...((((.(((...((((.....)))).--.)))...)))))))))((((((...))))))....------ ( -39.70, z-score = -0.48, R) >droSec1.super_1 9169465 108 + 14215200 CCGCGCAUUUUGCGGCAGCCAGCUCCCGGCUAAUGAAUGUUGGCCAAACGGCGGAGGAAUUCCCAUGUGGAGC--ACUCACUGCCGGCGGCCGGAAUCCAAUUCCGUUUC------ ((((((.....))(((((...(((((.(((((((....))))))).....(((..((....))..))))))))--.....))))).)))).((((((...))))))....------ ( -42.80, z-score = -1.30, R) >droYak2.chr2R 3828187 108 - 21139217 CCGCGCAUUUUGCGGCAGUCAGCUCCCGGCUAAUGAAUGUUGGCCAAACGGAGUAGGAAUUCCCAUGUGGAGC--AGUCACUGCCGGCGGGCGGAUUCCAAUUCCGUUUC------ ((((((.....))((((((..(((((((((((((....)))))))....(((((....)))))...).)))))--....)))))).))))(((((.......)))))...------ ( -47.00, z-score = -3.15, R) >droEre2.scaffold_4845 8402028 114 - 22589142 CCGCGCAUUUUGCGGCAGCCAGCUCCCGGCUAAUGAAUGUUGGCCAAACGGAGGAGGAAUUCCCAUGCGGAGC--AGUCACUGCCGGCGGGCGGAUUCCAAUUCCAAUUCCGUUUC (((((.....)))))............(((((((....)))))))(((((((((((((((((((.(((.(.((--((...))))).))))).)))))))...)))...))))))). ( -44.20, z-score = -1.18, R) >droAna3.scaffold_13266 7358146 111 - 19884421 CCGCGCAUUUUGCGGCAGCCGGUUCCGGGCUAAUGACCAACG-CCAAGCUCUGAAAGAUUUGUU-UGUAGAGCUUGGGAGCAACCGG-ACUCGGACUCGCAUUCCGUUUCCAUU-- ..(((.....(((((...(((..((((((((...........-((((((((((...((.....)-).)))))))))).)))..))))-)..)))..)))))...))).......-- ( -37.70, z-score = -0.91, R) >droGri2.scaffold_15245 5857510 95 + 18325388 UUGUGGCCCCAACAGCCAACAGCUAGCAGUCAGCAGUCAGUAGCCAUG----GCAGGCUGUCAUGUCUGUAGC------ACUGCC---AUCCCAAACCCGAUCCCGUU-------- (((((((.......))).))))...((((((.((((.((((((((...----...))))).).)).)))).).------))))).---....................-------- ( -25.70, z-score = -0.66, R) >consensus CCGCGCAUUUUGCGGCAGCCAGCUCCCGGCUAAUGAAUGUUGGCCAAACGGCGGAGGAAUUCCCAUGUGGAGC__ACUCACUGCCGGCGGCCGGAAUCCAAUUCCGUUUC______ ((((((.....))(((((...(((((.(((((((....)))))))..........((.....))....))))).......))))).)))).((((.......)))).......... (-19.91 = -22.57 + 2.66)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:25:30 2011