| Sequence ID | dm3.chr2R |
|---|---|
| Location | 11,646,212 – 11,646,305 |
| Length | 93 |
| Max. P | 0.864332 |
| Location | 11,646,212 – 11,646,305 |
|---|---|
| Length | 93 |
| Sequences | 11 |
| Columns | 118 |
| Reading direction | reverse |
| Mean pairwise identity | 65.54 |
| Shannon entropy | 0.66123 |
| G+C content | 0.49702 |
| Mean single sequence MFE | -26.12 |
| Consensus MFE | -12.65 |
| Energy contribution | -12.63 |
| Covariance contribution | -0.02 |
| Combinations/Pair | 1.23 |
| Mean z-score | -1.07 |
| Structure conservation index | 0.48 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.97 |
| SVM RNA-class probability | 0.864332 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 11646212 93 - 21146708 --------CCUUAACGCGCUCUCCUCCACCUCCUUGGC-GGUCUG--GAAAACAUUUUGCGGUUUGGCAGGCGCCAAACUUUGCAAAUAACUCACGAAUGGCGG-------------- --------......(((....(((.((.((.....)).-))...)--))......(((((((((((((....))))))))..))))).............))).-------------- ( -28.00, z-score = -1.46, R) >droEre2.scaffold_4845 8372566 88 + 22589142 --------CCUUAACGCG-----CUCCACCUCCUUGGC-AGUCUG--GAAAACAUUUUGCGGUUUGGCAGGCGCCAAACUUUGCAAAUAACUCACGAAUGGCGG-------------- --------......(((.-----.((((.(((....).-))..))--))......(((((((((((((....))))))))..))))).............))).-------------- ( -23.30, z-score = -0.32, R) >droYak2.chr2R 3797944 88 + 21139217 --------CCUUAACGCG-----CUCCACCUCCUUGGC-AGUCUG--GAAAACAUUUUGCGGUUUGGCAGGCGCCAAACUUUGCAAAUAACUCACGAAUGGCGG-------------- --------......(((.-----.((((.(((....).-))..))--))......(((((((((((((....))))))))..))))).............))).-------------- ( -23.30, z-score = -0.32, R) >droSec1.super_1 9139781 90 - 14215200 --------CCUUAACGCGCU---CUCCACCUCCUUGGC-AGUCUG--GAAAACAUUUUGCGGUUUGGCAGGCGCCAAACUUUGCAAAUAACUCACGAAUGGCGG-------------- --------......(((...---.((((.(((....).-))..))--))......(((((((((((((....))))))))..))))).............))).-------------- ( -23.30, z-score = -0.30, R) >droSim1.chr2R 10382073 90 - 19596830 --------CCUUAACGCGCU---CUCCACCUCCUUGGC-AGUCUG--GAAAACAUUUUGCGGUUUGGCAGGCGCCAAACUUUGCAAAUAACUCACGAAUGGCGG-------------- --------......(((...---.((((.(((....).-))..))--))......(((((((((((((....))))))))..))))).............))).-------------- ( -23.30, z-score = -0.30, R) >dp4.chr3 239134 96 + 19779522 -------------CCUCGU----UUCUCCUUUCUU--U-GGCCUG--GAAAACAUUUUGUGGUUUGGCAGGCGCCAAACUUUGCAAAUAACUCACGAAUGGAAGGAGAAAUGGCUGGC -------------((((((----((((((((((((--(-(...((--.....)).(((((((((((((....))))))))..))))).......)))).))))))))))))))..)). ( -34.40, z-score = -3.12, R) >droPer1.super_37 217691 96 + 760358 -------------CCUCGU----UUCUCCUUUCUU--U-GGCCUG--GAAAACAUUUUGUGGUUUGGCAGGCGCCAAACUUUGCAAAUAACUCACGAAUGGAAGGAGAAAUGGCUGGC -------------((((((----((((((((((((--(-(...((--.....)).(((((((((((((....))))))))..))))).......)))).))))))))))))))..)). ( -34.40, z-score = -3.12, R) >droAna3.scaffold_13266 7330108 77 + 19884421 ------------------G----UUCUUGCUUUGG--C-AAUGUG--GAAAACAUUUUGCGGUUUGGCAGGCGCCAAACUUUGCAAAUAACUCACGGUUGGCGG-------------- ------------------.----..((((((.(.(--(-((.(((--.....))).)))).)...))))))((((((.((.((.........)).)))))))).-------------- ( -22.70, z-score = -1.08, R) >droWil1.scaffold_180699 1645670 100 + 2593675 CUUCAACUGGGUCGGUCGGACGGUCGUGACGGUUGGUUCGGUUGGCUGUAAACAUUUUGUGGUUUGCUG-GCGCCAAACUUUGCAAAUAACUCACAAGUAG----------------- ...((((((..(((..((.((....))..))..)))..))))))(((((((((........)))))).)-))((........)).................----------------- ( -26.30, z-score = 0.02, R) >droVir3.scaffold_12823 1040647 101 + 2474545 -------CA-CGCGUUC---CUAUUCCGACCUCGAACU--GUGCGUUGUAAACAUUUUGUGGUU--GCA-GCGCCAAACUUUACAAAUAACUCACGAGGGGUGUCGAACACGCGGCA- -------..-(((((..---.....((..(((((...(--(.(((((((((.(((...))).))--)))-))))))....(((....)))....)))))))........)))))...- ( -26.96, z-score = 0.04, R) >droGri2.scaffold_15245 5824551 96 - 18325388 ----CAUCAUCUCAUUC---CUAUUCCAACCUCUAACU--GUGCGCUGUAAACAUUUUGUGGUU--GCA-GCGCUAAACUUUACAAAUAACUCACGAGGAGCGUUGUA---------- ----.............---......(((((((.....--..(((((((((.(((...))).))--)))-))))................((....))))).))))..---------- ( -21.40, z-score = -1.83, R) >consensus ________CCUUAACGCG_____UUCCACCUCCUUGGC_AGUCUG__GAAAACAUUUUGCGGUUUGGCAGGCGCCAAACUUUGCAAAUAACUCACGAAUGGCGG______________ .......................................................(((((((((((((....))))))))..)))))............................... (-12.65 = -12.63 + -0.02)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:25:25 2011