| Sequence ID | dm3.chr2R |
|---|---|
| Location | 11,645,953 – 11,646,009 |
| Length | 56 |
| Max. P | 0.730459 |
| Location | 11,645,953 – 11,646,009 |
|---|---|
| Length | 56 |
| Sequences | 5 |
| Columns | 56 |
| Reading direction | forward |
| Mean pairwise identity | 97.14 |
| Shannon entropy | 0.05157 |
| G+C content | 0.52143 |
| Mean single sequence MFE | -13.72 |
| Consensus MFE | -11.42 |
| Energy contribution | -11.82 |
| Covariance contribution | 0.40 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.18 |
| Structure conservation index | 0.83 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.53 |
| SVM RNA-class probability | 0.730459 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 11645953 56 + 21146708 UUAACCCUUUGGCUGGCCGCCUUUUUCCUGUCGUGCCAUGCCACACAACUACAACA .........((((((((((.(........).)).)))).))))............. ( -14.00, z-score = -2.52, R) >droSim1.chr2R 10381814 56 + 19596830 UUAACCCUUUGGCUGGCCGCCUUUUUCCUGUCGUGCCAUGCCACACAACUACAACA .........((((((((((.(........).)).)))).))))............. ( -14.00, z-score = -2.52, R) >droSec1.super_1 9139522 56 + 14215200 UUAACCCUUUGGCUGGCCGCCUUUUUCCUGUCGUGCCAUGCCACACAACUACAACA .........((((((((((.(........).)).)))).))))............. ( -14.00, z-score = -2.52, R) >droYak2.chr2R 3797657 56 - 21139217 UUAACCCAUUGGCUGGCCGCCUUUUUCCUGUCGUGCCAUGCCACACAACUACAACA .........((((((((((.(........).)).)))).))))............. ( -14.00, z-score = -2.34, R) >droEre2.scaffold_4845 8372310 56 - 22589142 UUUACCCUUUGGCCGGCCGCCUUUUUCCUGUCGUGGCAUGCCACACAACUACAACA .........((((..(((((..(......)..)))))..))))............. ( -12.60, z-score = -1.00, R) >consensus UUAACCCUUUGGCUGGCCGCCUUUUUCCUGUCGUGCCAUGCCACACAACUACAACA .........((((((((((.(........).)).)))).))))............. (-11.42 = -11.82 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:25:24 2011