| Sequence ID | dm3.chr2R |
|---|---|
| Location | 11,620,314 – 11,620,431 |
| Length | 117 |
| Max. P | 0.829431 |
| Location | 11,620,314 – 11,620,431 |
|---|---|
| Length | 117 |
| Sequences | 6 |
| Columns | 117 |
| Reading direction | reverse |
| Mean pairwise identity | 79.49 |
| Shannon entropy | 0.40127 |
| G+C content | 0.56132 |
| Mean single sequence MFE | -39.20 |
| Consensus MFE | -26.23 |
| Energy contribution | -26.70 |
| Covariance contribution | 0.47 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.54 |
| Structure conservation index | 0.67 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.83 |
| SVM RNA-class probability | 0.829431 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 11620314 117 - 21146708 GCCAGCGGGAACAUUAGCCGUUAGUGGUGCAGCCUUGGAUUCAGUCUCAUCCAGAUCCCGAUCCUGACCCCCUUCUCGAUCCGGAUUCUGAUCCUCUGCUACUGCUUUCGUUGGCGA (((((((..(.((.((((....((.((..(((...(((((........)))))(((((.((((..((......))..)))).))))))))..)).)))))).)).)..))))))).. ( -40.40, z-score = -2.12, R) >droSim1.chr2R 10355984 117 - 19596830 GCCAGCGGGAACUUUAGCCGUUAGUGGUGCAGCCUUGGAUUCUGUCUCAUCCAGAUCCCGAUCCUGACCCCCUUCCUGAUCCGGAUUCUGAUCCUCUGCUGCUGCUUUCGUUGGCGA (((((((..(......((((....))))(((((...((((...........(((((((.((((..((......))..)))).))).))))))))...)))))...)..))))))).. ( -40.90, z-score = -2.30, R) >droSec1.super_1 9113507 117 - 14215200 GCCAGCGGGAACUUUAGCCGUUAGUGGUGCAGCCUUGGAUUCAGUCUCAUCCAGAUCCCGACCCUGACCCUCUCCCUGAUCCGGAUUCUGAUCCUCUGCUGCUGCAUUUGUUGGCGA (((((((((.......((((....))))(((((...((((.(((....((((.((((..((...........))...)))).)))).)))))))...)))))....))))))))).. ( -37.70, z-score = -1.06, R) >droYak2.chr2R 3771294 105 + 21139217 GCCAGCGGGAACAUUAGCCGUUAGUGGUGCAGCCCUGGAACCAGUCUCGUCCAGAUCUCGA------------UCUUGAUCCUGAUCCGGAUCCACUGCUGCUGCUUUCGUUGGCGA (((((((..(.((...((((....))))(((((..((((.((.(((..(((.((((....)------------))).)))...)))..)).))))..))))))).)..))))))).. ( -41.90, z-score = -2.49, R) >droEre2.scaffold_4845 8346764 117 + 22589142 GCCAGCGGGAACAUUAGCCGUUAGUGGUGCAGCCUUGGAACCAGUCGCAUCCAGAACUCGAUCCGCACCGCCUUCCUGAUCCUGGUUCUGAUCCACUGCUGCUGCUUUCGUUGGCGA (((((((..(.((.((((....(((((.......(..(((((((....(((..(((..((........))..)))..))).)))))))..).))))))))).)).)..))))))).. ( -40.40, z-score = -1.05, R) >droAna3.scaffold_13266 7307463 111 + 19884421 UCCAGCGGGAACUUUAGCCGUUAGUGGAGCAGCCUGGGAUCCUACUAUCUCCUGCAC---AUCCUUAUUCAGAUCCUUAUCUG---CCGCGGCAGCUGCUGCUUUUUUCGUUGGCGA .((((((..((.....(((((....(((((((...(((((......)))))))))..---.))).....(((((....)))))---..)))))(((....))).))..))))))... ( -33.90, z-score = -0.24, R) >consensus GCCAGCGGGAACAUUAGCCGUUAGUGGUGCAGCCUUGGAUCCAGUCUCAUCCAGAUCCCGAUCCUGACCCCCUUCCUGAUCCGGAUUCUGAUCCUCUGCUGCUGCUUUCGUUGGCGA ((((((((((......((((....))))(((((.(((((..........))))).......................((((........))))....)))))...)))))))))).. (-26.23 = -26.70 + 0.47)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:25:20 2011