| Sequence ID | dm3.chr2R |
|---|---|
| Location | 11,613,218 – 11,613,322 |
| Length | 104 |
| Max. P | 0.528752 |
| Location | 11,613,218 – 11,613,322 |
|---|---|
| Length | 104 |
| Sequences | 3 |
| Columns | 104 |
| Reading direction | reverse |
| Mean pairwise identity | 74.75 |
| Shannon entropy | 0.34992 |
| G+C content | 0.30488 |
| Mean single sequence MFE | -17.47 |
| Consensus MFE | -6.36 |
| Energy contribution | -8.03 |
| Covariance contribution | 1.67 |
| Combinations/Pair | 1.10 |
| Mean z-score | -2.68 |
| Structure conservation index | 0.36 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.07 |
| SVM RNA-class probability | 0.528752 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 11613218 104 - 21146708 ACAACGUGCAACAUACAAACUUUAAAGAAGGGAAAUUUUCUUACAUCUCCCAUAUGACUUGAUUAAAUCAUCAUGGAACUUUAAUCAGCAUAUGCAGCAAACAA ......(((...............(((((((....)))))))........((((((.((.(((((((((......))..)))))))))))))))..)))..... ( -17.00, z-score = -1.76, R) >droSim1.chr2R 10348868 89 - 19596830 -------ACAAGAAAC-AACUUUAAGGAAGUGAGAUUUUCUUGCAUCUCCCAUAUUACUUGAUUAAAUCAUCAUAUAACUUUAAUCAACUUAUGCAA------- -------.(((((((.-.(((((...))))).....))))))).......((((....(((((((((............)))))))))..))))...------- ( -12.10, z-score = -1.28, R) >droSec1.super_1 9106441 88 - 14215200 ACGAGAUGCAAGAUACAAACUUUAAGCAAGUGAGAUUUUCUUGCAUCUCCCAUAUUACUUGAUUAAAUCAUCAUAGAACUUUAAUCAA---------------- ..(((((((((((.....((((.....)))).......)))))))))))..........((((((((((......))..)))))))).---------------- ( -23.30, z-score = -5.01, R) >consensus AC_A__UGCAAGAUACAAACUUUAAGGAAGUGAGAUUUUCUUGCAUCUCCCAUAUUACUUGAUUAAAUCAUCAUAGAACUUUAAUCAAC_UAUGCA________ .....((((((((.....((((.....)))).......))))))))............(((((((((............)))))))))................ ( -6.36 = -8.03 + 1.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:25:18 2011