| Sequence ID | dm3.chr2R |
|---|---|
| Location | 11,587,168 – 11,587,276 |
| Length | 108 |
| Max. P | 0.906649 |
| Location | 11,587,168 – 11,587,276 |
|---|---|
| Length | 108 |
| Sequences | 7 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 64.53 |
| Shannon entropy | 0.63745 |
| G+C content | 0.39847 |
| Mean single sequence MFE | -25.13 |
| Consensus MFE | -9.08 |
| Energy contribution | -10.47 |
| Covariance contribution | 1.40 |
| Combinations/Pair | 1.45 |
| Mean z-score | -1.92 |
| Structure conservation index | 0.36 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.19 |
| SVM RNA-class probability | 0.906649 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 11587168 108 - 21146708 -----------UUCCUUAUAUCGAAAGAU-CUCGCAAAACAUGUGGCGCAGUUGUAUUCAAUUUUGCCAUAGUCCCAAGUUCCAGCAAUAUGUUAGGUAAGUUUGGAUACAAUGAUAUUA -----------......((((((......-...........(((((((.(((((....))))).)))))))((((.((.(((((((.....))).)).)).)).))))....)))))).. ( -23.70, z-score = -1.63, R) >droSim1.chr2R 10319487 95 - 19596830 -----------UUCCUUAUAUCGAAAGAU-CUCGCAAAACAUGUGGCGCAGUUGCAUUCAAUUUUGCCAUAGUCCCAAGUUCCAGCGAUAUGUUAUGUGAGUUUUUA------------- -----------........(((....)))-((((((.(((((((((((.(((((....))))).))))..........((....)).))))))).))))))......------------- ( -24.50, z-score = -2.97, R) >droSec1.super_1 9079676 95 - 14215200 -----------UUCCUUAUAUCGAAAGAU-CUCGCAAAACAUGUGGCGCAGUUGCAUUCAAUUUUGCCAUAGUCCCAAGUUCCAGCGAUAUGUUAGGUGAGUUUUUA------------- -----------........(((....)))-(((((..(((((((((((.(((((....))))).))))..........((....)).)))))))..)))))......------------- ( -23.10, z-score = -2.19, R) >droYak2.chr2R 3736214 105 + 21139217 -----------UUCCUUAUAUCGAAAGAU-CUCGCACAACAUGUGGCGCUGUUGCACCCAAUUCUGCCACAGUCCCAAGUUCCAGCGAUAUGUUAGGUGAGU-UGGAUACAAUGAUAU-- -----------.(((....(((....)))-(((((..(((((((((.(((((.(((........))).))))).))..((....)).)))))))..))))).-.)))...........-- ( -29.50, z-score = -2.05, R) >droEre2.scaffold_4845 8309801 106 + 22589142 -----------UUCUUUGUAUCGAAAGAU-AUCGCAGAACAUGUGGCGCUGUUGCCUCCAGUUUUGCAACAGUCCCAUGUUCCAACGAUAUGUUAGGUGAGUGUGGAUACAAUGACAU-- -----------.((.(((((((.(((.((-((((..(((((((.((.((((((((..........)))))))))))))))))...)))))).)).........).))))))).))...-- ( -34.90, z-score = -3.04, R) >droAna3.scaffold_13266 7275158 84 + 19884421 ------------------------AAAAU-CUGUCGCAGUUUAUGGCGUUGUUGCAGGCAACUUUGCCACAGUGACAAGUUUCGCCAUUACUUAAGGUAGGUUCCUUGG----------- ------------------------..(((-((..(..(((..((((((((((..(.((((....))))...)..))))....)))))).)))...)..)))))......----------- ( -25.80, z-score = -2.12, R) >droWil1.scaffold_180699 1553120 105 + 2593675 AUGUAUCUAUAAAUUUAGUUUGGCAAAAUGUUUGCAAAAUAUUUGCAAC--CUGUUCUAAUCUCUGCAAUAGACCUAAAUUUCAACGUUAUAUGAGGUAAGUUUGCC------------- .....................((((((....((((((.....)))))).--((((((........).)))))......((((((........))))))...))))))------------- ( -14.40, z-score = 0.57, R) >consensus ___________UUCCUUAUAUCGAAAGAU_CUCGCAAAACAUGUGGCGCAGUUGCAUUCAAUUUUGCCAUAGUCCCAAGUUCCAGCGAUAUGUUAGGUGAGUUUGGA_____________ ..............................(((((..(((((((((((..((((....))))..))))))).......((....))....))))..)))))................... ( -9.08 = -10.47 + 1.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:25:13 2011