| Sequence ID | dm3.chr2R |
|---|---|
| Location | 11,499,418 – 11,499,513 |
| Length | 95 |
| Max. P | 0.810861 |
| Location | 11,499,418 – 11,499,513 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 95 |
| Reading direction | forward |
| Mean pairwise identity | 60.14 |
| Shannon entropy | 0.77537 |
| G+C content | 0.32541 |
| Mean single sequence MFE | -16.94 |
| Consensus MFE | -6.86 |
| Energy contribution | -6.92 |
| Covariance contribution | 0.06 |
| Combinations/Pair | 1.42 |
| Mean z-score | -0.98 |
| Structure conservation index | 0.40 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.76 |
| SVM RNA-class probability | 0.810861 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 11499418 95 + 21146708 AGGGAUAUUAUAUGGUAAAUAUCAAGUAUCCGCUAUGGGUACGAAAUAUAUAAAGGGACUUUGUAUUAGGGCACUAGACAAAGAAUAUAUUAAGU ...((((((........))))))..((((((.....))))))................((((((.((((....))))))))))............ ( -18.60, z-score = -1.65, R) >droSim1.chr2R 10228021 87 + 19596830 AGGGAUAUUAUAUGGUAAAUAUCAAGUAUCCGCCAUGGGUACGAAAUACAUAAAGGUACUUUGUAUUUGGGCACUAUUUUGAGGUCU-------- ..(((((((...((((....)))))))))))(((.(..(((((((.(((......))).)))))))..))))...............-------- ( -22.40, z-score = -2.10, R) >droSec1.super_1 8989855 95 + 14215200 AGGGAUAUUAUAUGGUAAAUAUCAAGUAUCCGCCAUGGGUGCGAAAUAUAUAAAGGGAUUUUGUAUUUGGGCACUAGACAAAGUACUUGCAUAGU ..(((((((...((((....)))))))))))(((.(..(((((((((..........)))))))))..))))((((..(((.....)))..)))) ( -23.40, z-score = -1.97, R) >droYak2.chr2R 3646909 80 - 21139217 AGGGAUAUUAUAUGUUAAAUAUCAGGUAUCCGCCAUGGGAACC---UAUGCUAACAAAAUAUUAAACAAAGAAC-AUAUCAAGU----------- ..(((((((((((.....))))..)))))))((.((((....)---))))).......................-.........----------- ( -11.90, z-score = -0.41, R) >droEre2.scaffold_4845 8225065 93 - 22589142 AGGGAUAUUAUAUGGUAAAUAUCAAGUAUCCGCCAUGGGUACCUAAAA--UAAGCAGAUUCUAUAAUUGGGCUCUAGAAAAAGAAUAUAUGAAGU .......(((((((.......((..((((((.....))))))......--.....(((..(((....)))..))).)).......)))))))... ( -13.64, z-score = 0.85, R) >droWil1.scaffold_181009 1974275 87 - 3585778 UUUAUUAUUACCUUAAAAGUGGCAAGCAAA-GAAAUAUAAACU--GUUUCUGACCUAAAUCUCAAGCCAUUCAUUCAAAAUUGGCUUAAU----- ..........((........))..((...(-((((((.....)--))))))...)).......((((((............))))))...----- ( -11.70, z-score = -0.58, R) >consensus AGGGAUAUUAUAUGGUAAAUAUCAAGUAUCCGCCAUGGGUACGAAAUAUAUAAACGGAAUUUGUAUUUGGGCACUAGAAAAAGAAUUUAU_____ ...((((((........))))))..((((((.....))))))..................................................... ( -6.86 = -6.92 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:25:06 2011