| Sequence ID | dm3.chr2R |
|---|---|
| Location | 11,492,379 – 11,492,481 |
| Length | 102 |
| Max. P | 0.994395 |
| Location | 11,492,379 – 11,492,481 |
|---|---|
| Length | 102 |
| Sequences | 5 |
| Columns | 102 |
| Reading direction | forward |
| Mean pairwise identity | 75.15 |
| Shannon entropy | 0.45770 |
| G+C content | 0.54322 |
| Mean single sequence MFE | -18.20 |
| Consensus MFE | -14.64 |
| Energy contribution | -15.08 |
| Covariance contribution | 0.44 |
| Combinations/Pair | 1.06 |
| Mean z-score | -2.13 |
| Structure conservation index | 0.80 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.70 |
| SVM RNA-class probability | 0.994395 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 11492379 102 + 21146708 CAUCGCUUGUUGCUGCCGCUGUUUUCUGCUAGUUUCCGAAGCCCCUCCACCGCCCUCGAACCUCAACACAUUACCAACUUCCCCUUAGGCAGUCAAACAAGU ....(((((((((((((((........)).......(((.((.........))..))).............................))))))..))))))) ( -20.30, z-score = -1.97, R) >droSim1.chr2R 10220974 88 + 19596830 CAUCGCUUGUUGCUGCCGCUGUUUUCUGCUAGUUUCCGAAGCCCCCCC--------------UCUACCCAUUACCAACUCCCCCUCAGGCAGUCAAACAAGU ....(((((((((((((((........))..(((.....)))......--------------.........................))))))..))))))) ( -17.50, z-score = -2.32, R) >droSec1.super_1 8982797 102 + 14215200 CAUCGCUUGUUGCUGCCGCUGUUUUCUGCUAGUUUCGAAGCUCCCCCCCACCUUCUCUAACCUCUACCCAUUACCAACUCCCCCUCAGGCAGUCAAACAAGU ....(((((((((((((((........))..(((..((((...........))))...)))..........................))))))..))))))) ( -20.00, z-score = -3.17, R) >droYak2.chr2R 3641606 102 - 21139217 CAUCGCUUGUUGCUGCCGCUGUUUUCUGCUAGUUUCCAAACCCUUCCGUAGCCCCCCCCCCUCCCCCUGAACCAGUACACCCCCUCAAGCAGUCAAACAAGU ....((((((((((((.((........)).....................................(((...))).............)))))..))))))) ( -13.90, z-score = -1.28, R) >droEre2.scaffold_4845 8214909 81 - 22589142 CAUCGCUUGUUGCUGCCGCUGUUUUCUGCUAGUUUCCGAACCCUGCCG-----------------AACCACUA----CUCCCCCUCAGGCAGUCAAACAAGU ....(((((((((((((((........))((((...((........))-----------------....))))----..........))))))..))))))) ( -19.30, z-score = -1.90, R) >consensus CAUCGCUUGUUGCUGCCGCUGUUUUCUGCUAGUUUCCGAACCCCCCCC______C_C___C_UCUACCCAUUACCAACUCCCCCUCAGGCAGUCAAACAAGU ....(((((((((((((((........))..(((....)))..............................................))))))..))))))) (-14.64 = -15.08 + 0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:25:05 2011