| Sequence ID | dm3.chr2R |
|---|---|
| Location | 11,475,732 – 11,475,783 |
| Length | 51 |
| Max. P | 0.878221 |
| Location | 11,475,732 – 11,475,783 |
|---|---|
| Length | 51 |
| Sequences | 7 |
| Columns | 53 |
| Reading direction | forward |
| Mean pairwise identity | 87.01 |
| Shannon entropy | 0.22978 |
| G+C content | 0.32694 |
| Mean single sequence MFE | -11.80 |
| Consensus MFE | -7.07 |
| Energy contribution | -7.03 |
| Covariance contribution | -0.04 |
| Combinations/Pair | 1.13 |
| Mean z-score | -2.73 |
| Structure conservation index | 0.60 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.03 |
| SVM RNA-class probability | 0.878221 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 11475732 51 + 21146708 UUUGUGCAAGUUUUAAUAAAGUCAAUUCGG-GAUUCAAG-AAAUUUGCACAGC .(((((((((((((.....((((.......-))))...)-)))))))))))). ( -13.90, z-score = -3.89, R) >droPer1.super_37 47109 53 - 760358 UUUAGGAAACUUUUGAUAAAGUCAAUUUUUCGAUUCGAGCAAGUUUUCACAGC ....((((((((((((....(((........)))))))..))))))))..... ( -8.10, z-score = -0.97, R) >dp4.chr3 67337 53 - 19779522 UUUAGGAAACUUUUGAUAAAGUCAAUUUUUCGAUUCGAGCAAGUUUUCACAGC ....((((((((((((....(((........)))))))..))))))))..... ( -8.10, z-score = -0.97, R) >droAna3.scaffold_13266 7165701 51 - 19884421 UUUGUGCAACUUUUAAUAAAGUCAGUUUUG-GAUUCAAG-AAAUUUGCACAGC .((((((((((((....)))))...(((((-....))))-)....))))))). ( -10.80, z-score = -1.60, R) >droEre2.scaffold_4845 8196689 51 - 22589142 UUUGUGCAAGUUUUAAUAAAGUCAAUUCGG-GAUUCAAG-AAAUUUGCACAGC .(((((((((((((.....((((.......-))))...)-)))))))))))). ( -13.90, z-score = -3.89, R) >droYak2.chr2R 3623091 51 - 21139217 UUUGUGCAAGUUUUAAUAAAGUCAAUUCGG-GAUUCAAG-AAAUUUGCACAGC .(((((((((((((.....((((.......-))))...)-)))))))))))). ( -13.90, z-score = -3.89, R) >droSec1.super_1 8966476 51 + 14215200 UUUGUGCAAGUUUUAAUAAAGUCAAUUCGG-GAUUCAAG-AAAUUUGCACAGC .(((((((((((((.....((((.......-))))...)-)))))))))))). ( -13.90, z-score = -3.89, R) >consensus UUUGUGCAAGUUUUAAUAAAGUCAAUUCGG_GAUUCAAG_AAAUUUGCACAGC .((((((((.(((......((((........)))).....))).)))))))). ( -7.07 = -7.03 + -0.04)
| Location | 11,475,732 – 11,475,783 |
|---|---|
| Length | 51 |
| Sequences | 7 |
| Columns | 53 |
| Reading direction | reverse |
| Mean pairwise identity | 87.01 |
| Shannon entropy | 0.22978 |
| G+C content | 0.32694 |
| Mean single sequence MFE | -7.53 |
| Consensus MFE | -6.01 |
| Energy contribution | -6.26 |
| Covariance contribution | 0.25 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.83 |
| Structure conservation index | 0.80 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.82 |
| SVM RNA-class probability | 0.826758 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 11475732 51 - 21146708 GCUGUGCAAAUUU-CUUGAAUC-CCGAAUUGACUUUAUUAAAACUUGCACAAA ..(((((((.(((-..((((((-.......)).))))...))).))))))).. ( -8.10, z-score = -2.38, R) >droPer1.super_37 47109 53 + 760358 GCUGUGAAAACUUGCUCGAAUCGAAAAAUUGACUUUAUCAAAAGUUUCCUAAA ((.((....))..)).......((((..((((.....))))...))))..... ( -5.50, z-score = -0.67, R) >dp4.chr3 67337 53 + 19779522 GCUGUGAAAACUUGCUCGAAUCGAAAAAUUGACUUUAUCAAAAGUUUCCUAAA ((.((....))..)).......((((..((((.....))))...))))..... ( -5.50, z-score = -0.67, R) >droAna3.scaffold_13266 7165701 51 + 19884421 GCUGUGCAAAUUU-CUUGAAUC-CAAAACUGACUUUAUUAAAAGUUGCACAAA ..(((((......-.(((....-)))....((((((....))))))))))).. ( -9.30, z-score = -1.94, R) >droEre2.scaffold_4845 8196689 51 + 22589142 GCUGUGCAAAUUU-CUUGAAUC-CCGAAUUGACUUUAUUAAAACUUGCACAAA ..(((((((.(((-..((((((-.......)).))))...))).))))))).. ( -8.10, z-score = -2.38, R) >droYak2.chr2R 3623091 51 + 21139217 GCUGUGCAAAUUU-CUUGAAUC-CCGAAUUGACUUUAUUAAAACUUGCACAAA ..(((((((.(((-..((((((-.......)).))))...))).))))))).. ( -8.10, z-score = -2.38, R) >droSec1.super_1 8966476 51 - 14215200 GCUGUGCAAAUUU-CUUGAAUC-CCGAAUUGACUUUAUUAAAACUUGCACAAA ..(((((((.(((-..((((((-.......)).))))...))).))))))).. ( -8.10, z-score = -2.38, R) >consensus GCUGUGCAAAUUU_CUUGAAUC_CCGAAUUGACUUUAUUAAAACUUGCACAAA ..(((((((.(((...((((((........)).))))...))).))))))).. ( -6.01 = -6.26 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:25:02 2011