| Sequence ID | dm3.chr2R |
|---|---|
| Location | 11,475,524 – 11,475,625 |
| Length | 101 |
| Max. P | 0.555571 |
| Location | 11,475,524 – 11,475,625 |
|---|---|
| Length | 101 |
| Sequences | 7 |
| Columns | 103 |
| Reading direction | forward |
| Mean pairwise identity | 77.79 |
| Shannon entropy | 0.44783 |
| G+C content | 0.39994 |
| Mean single sequence MFE | -25.89 |
| Consensus MFE | -11.67 |
| Energy contribution | -13.04 |
| Covariance contribution | 1.37 |
| Combinations/Pair | 1.32 |
| Mean z-score | -1.81 |
| Structure conservation index | 0.45 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.13 |
| SVM RNA-class probability | 0.555571 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 11475524 101 + 21146708 GUGAUUUAAUCGACAG--CCCAUCGAUUGUUAACUGAGGGGAUUUUAUGGAUGCCUUGUUUAUUCCAUGGCUAGCAAAUUGUCGGUUAACUCACAGAUUAGUU ((((.(((((((((((--(((.(((.........))).)))...(((((((............)))))))........))))))))))).))))......... ( -27.80, z-score = -1.97, R) >droSim1.chr2R 10204489 101 + 19596830 GUGAUUUAAUCGACAG--CCCAUCGAUUGUUAACUGAGGGGAUUUUAUGGCUACCUUGUUUAUUACAUGGCUAGCAAAUUGUCGGUUAACUCACAGAUUAGUU ((((.(((((((((((--(((.(((.........))).)))........((((((.(((.....))).)).))))...))))))))))).))))......... ( -31.40, z-score = -3.68, R) >droSec1.super_1 8966268 101 + 14215200 GUGAUUUAAUCGACAG--CCCAUCGAUUGUUAACUGAGGGGAUUUUAUGGCUAUCUUGUUUAUUCCAUGGCUAGCAAAUUGUUGGUUAACUCACAGAUUAGUU ((((.(((((((((((--(((.(((.........))).)))......(((((((............))))))).....))))))))))).))))......... ( -25.40, z-score = -1.55, R) >droYak2.chr2R 3622869 101 - 21139217 GUGAUUUAAUCGACAG--CCCAUCGAUUGUUAACUGAGGUGAUUUUAUGGCUGCCUUGUUUAUAACAUGGCUAGCAAAUUGUCGGUUAACUCACAGAUUAGUU ((((.(((((((((((--..((((.............))))........((((((.(((.....))).))).)))...))))))))))).))))......... ( -30.02, z-score = -3.01, R) >droEre2.scaffold_4845 8196476 101 - 22589142 GUGAUUUAAUCGACAG--CCCAUCGAUUGUUAACUGAGGGGAUUUUAUGGCCGCCUUGUUUAUACCAUGGCUAGCAAAUUGUCGGUUAACUCACAGAUUAGUU ((((.(((((((((((--(((.(((.........))).)))......((((((....((....))..)))))).....))))))))))).))))......... ( -28.30, z-score = -2.01, R) >droAna3.scaffold_13266 7165484 97 - 19884421 GUGAUUUAAUCGACAGGGCCCAUCGAUUGCUAACUG-GAACAUUUUAUGGCUGCCUUGCAAUUU-----GCUGGCAAAUUGUUGGUUAACUCUCAGAUUAGUU (.((.(((((((((((.(((....((((((.....(-(..(((...)))....))..)))))).-----...)))...))))))))))).)).)......... ( -24.80, z-score = -1.08, R) >droGri2.scaffold_15112 3742885 82 - 5172618 -------CUUCGGCAG--------CAUCGUCACAUCAUAAUUUAUGAUCGAAAACGCGUUU------UGGGUUGCGGUUUUCCACUCAGCUUACAGAUUUGUU -------.((((((..--------....)))..((((((...)))))).)))((((.((((------(((((((.(........).))))))).)))).)))) ( -13.50, z-score = 0.66, R) >consensus GUGAUUUAAUCGACAG__CCCAUCGAUUGUUAACUGAGGGGAUUUUAUGGCUGCCUUGUUUAUUCCAUGGCUAGCAAAUUGUCGGUUAACUCACAGAUUAGUU ((((.(((((((((((..................(((((...)))))..((((((.((.......)).)).))))...))))))))))).))))......... (-11.67 = -13.04 + 1.37)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:25:01 2011