| Sequence ID | dm3.chr2R |
|---|---|
| Location | 11,444,733 – 11,444,834 |
| Length | 101 |
| Max. P | 0.705052 |
| Location | 11,444,733 – 11,444,834 |
|---|---|
| Length | 101 |
| Sequences | 4 |
| Columns | 111 |
| Reading direction | reverse |
| Mean pairwise identity | 78.00 |
| Shannon entropy | 0.34709 |
| G+C content | 0.37518 |
| Mean single sequence MFE | -16.61 |
| Consensus MFE | -9.48 |
| Energy contribution | -8.97 |
| Covariance contribution | -0.50 |
| Combinations/Pair | 1.29 |
| Mean z-score | -1.98 |
| Structure conservation index | 0.57 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.46 |
| SVM RNA-class probability | 0.705052 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 11444733 101 - 21146708 ----------AGCUUACUAACUUACGCACCUUGAGAUAAAUUACUCCCGACAUGGGAAUUCCCUGAUUUCAUGUUAUUCCUCACGUUGUAGCACAACUAUAAAAGCAAAAA ----------.((((..........((.....(((........))).((((.(((((((..(.((....)).)..))))).)).))))..))..........))))..... ( -17.35, z-score = -1.59, R) >droYak2.chr2R 3590710 110 + 21139217 UCCAACCACCUGACAAAC-UCUUAAGCACCUAGAGAUAAAUUAAUCUCGACAUGGGAAUUCCCAGACUCCAUGUUACAUUUCGCAUUGUAGCACAACUAAAAUAACAAUAA ..................-.............(((((......)))))((..((((....))))...))..(((((((........))))))).................. ( -17.70, z-score = -2.21, R) >droSec1.super_1 8935198 107 - 14215200 ----AGCAUCUGACAAACGACUUACGCACCUUGAGAUACAUUACUCCCGACUUGGGAACUCCCAAAUUCCAUAUUAUUCCUCACAUUGUAGCACAACUAUAAUAGCAAAAA ----.....................((....((((................(((((....)))))..............)))).(((((((.....))))))).))..... ( -14.01, z-score = -1.05, R) >droSim1.chr2R 10173387 103 - 19596830 --------UCUGACAAACGACUUACGCACCUUGAGAUACAUUACUCUCGAUUUGGGAAUUCCCGAAUUCCAUAUUAUUCCUCACAUUAUAGCACAACUAUAAAAGCAAAAA --------.................((.....((((........))))((((((((....)))))))).................((((((.....))))))..))..... ( -17.40, z-score = -3.08, R) >consensus ________UCUGACAAACGACUUACGCACCUUGAGAUAAAUUACUCCCGACAUGGGAAUUCCCAAAUUCCAUAUUAUUCCUCACAUUGUAGCACAACUAUAAAAGCAAAAA .........................((.....(((..................(((....))).(((.....)))....)))...((((((.....))))))..))..... ( -9.48 = -8.97 + -0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:24:59 2011