| Sequence ID | dm3.chr2L |
|---|---|
| Location | 2,932,786 – 2,932,881 |
| Length | 95 |
| Max. P | 0.533148 |
| Location | 2,932,786 – 2,932,881 |
|---|---|
| Length | 95 |
| Sequences | 5 |
| Columns | 102 |
| Reading direction | reverse |
| Mean pairwise identity | 58.37 |
| Shannon entropy | 0.72263 |
| G+C content | 0.41940 |
| Mean single sequence MFE | -17.91 |
| Consensus MFE | -3.60 |
| Energy contribution | -3.76 |
| Covariance contribution | 0.16 |
| Combinations/Pair | 1.30 |
| Mean z-score | -2.08 |
| Structure conservation index | 0.20 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.08 |
| SVM RNA-class probability | 0.533148 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 2932786 95 - 23011544 UAGUAAUAGAUCGUUUGUUCAUAUUUAUUUGCCCAGCUCUUAAAGCUGCAACCACC---CACUGAGACC----ACCCAGUUGUACCAGCAAACAGUCACUUC ........(((.(((((((..(((....((((..((((.....)))))))).....---.((((.....----...)))).)))..))))))).)))..... ( -16.90, z-score = -1.78, R) >droVir3.scaffold_12963 19391217 86 + 20206255 AAAAAGUUUACAGUUUGCACGUUCGUGUUUGCAGAGCGUUAACAGUUAACAGCACUGUUAAUUAACAGUUUGCGGUCUGUCUCUCC---------------- .........((((.((((((((((.((....)))))))((((((((.......)))))))).........))))).))))......---------------- ( -20.30, z-score = -0.98, R) >droSim1.chr2L 2893975 84 - 22036055 AAGUAAUAGAUUGUUUGU--------------CCAGCUCUUAAAGCUGCAACCACCACACACUGCGACC----ACCCAGUUGUAACAGCAAACAGUCAUUUC ........((((((((((--------------.(((((.....)))))..............((((((.----.....))))))...))))))))))..... ( -21.70, z-score = -3.50, R) >droYak2.chr2L 2928212 95 - 22324452 UAAUAAUAGAUCGUUUGUUCAUAUUUAUUUGCCCAGCUCUUAAAGCUGCCACCACC---CACUGAGACU----ACCCAGUUUUACCAGCAAACAUUUAUUUC ....(((((((.(((((((..............(((((.....)))))........---...(((((((----....)))))))..)))))))))))))).. ( -17.20, z-score = -3.72, R) >droEre2.scaffold_4929 2980658 82 - 26641161 UAAUAAUAGAUCGUUGGUUCCUACUUAUUUGGCCAGCUCUUUAAGCUGCCACCGCC---CACUGAGACUAC-AACCCAGUUAUUUC---------------- .((((((.(...((((.(((.........((((.((((.....)))))))).....---....)))....)-))).).))))))..---------------- ( -13.47, z-score = -0.42, R) >consensus UAAUAAUAGAUCGUUUGUUCAUACUUAUUUGCCCAGCUCUUAAAGCUGCCACCACC___CACUGAGACU____ACCCAGUUGUACCAGCAAACA_U_A_UUC .................................(((((.....)))))............((((.(........).))))...................... ( -3.60 = -3.76 + 0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:12:38 2011